Array 1 738659-740171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015412.1 Pseudoalteromonas luteoviolacea strain S4054249 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================ ================== 738659 28 100.0 32 ............................ GAAGCGGGTGTGATTGTGATAAGCCGTGTCAC 738719 28 100.0 32 ............................ AGAAGCATCCCCTTGCTCTAAAGATTCTAACG 738779 28 100.0 33 ............................ GTTGAAATATGGCAAGCAACTTTTCTAAACCCA 738840 28 100.0 32 ............................ GTATCAAAAGCTGCCAAAAGAAGTTCAAGGTC 738900 28 100.0 32 ............................ TTAAAAGCTTCTATCAGTAACTTTGACATGGG 738960 28 100.0 32 ............................ TCGCGCATTAGTTACGGTCTTGCCTTCGCGTA 739020 28 100.0 32 ............................ GCTTATGGTTCGGCCAGTCTTTCGGTCAATGC 739080 28 100.0 32 ............................ AGCATGTCATCAGACGAAGCCTTGGGGCTTTT 739140 28 100.0 32 ............................ TAGCAAATACAAACGCACAAATTAAGCATGGT 739200 28 100.0 32 ............................ AATTTCTTCTGCAGTTCATCTGCTAGAACCGT 739260 28 100.0 32 ............................ AACATGAGCTGGATTCAACTTGATGATGCCGT 739320 28 100.0 32 ............................ AATCAAGGTAAACAATGACTGCCAGCGCGAGT 739380 28 100.0 32 ............................ AAAATTAAAGAAGAACACGAGAACATTATTGT 739440 28 100.0 32 ............................ TGACAGTCCATTCAAAGCATATGGAGATGTAC 739500 28 100.0 32 ............................ AAACTGTTTGACCATGGTACAACTGCATGTGC 739560 28 100.0 32 ............................ TAACAAAAGAACTGCAGGAGTTAAAGGAAAGC 739620 28 100.0 32 ............................ TTTGCCGTCTCCGTTCATATCGCTGTCTTGAT 739680 28 89.3 106 .........................GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCCCAGTATTGGAACTATTCCG 739814 28 85.7 106 ............G............GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCCATGTTGGAAAAATTCCG 739948 28 96.4 32 ............G............... ACATAACTAAAATGCAGTCGTCTGCTGCAATG 740008 28 85.7 108 ....................G....GTG ATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCTGTAATAGCTTTGTACACTA 740144 27 67.9 0 T.........-C......G.T...CGTG | A [740166] ========== ====== ====== ====== ============================ ============================================================================================================ ================== 22 28 96.6 43 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGACATAGACTACTCAAGGAGAAATCATGAAAAAAGTACTACTCGCTGCGGTTAGTTTTTTAGGAATGAGCGTAGCAGCTATGGCGGCAGACACACAATCGACTACTGAAAATCAAACTTTAAAAGTGGATGGCGTTACATCTGCCACATATCCAACGACCCCAACTATTTTAGATCAATTGATCCCAGAAAATGCGTGTCAGGCTCGTTGCTTGTATGAATATGAAGCCTGTAGTAAGTGGGCACCACCTTGGACAGATTGTGAATACTATGTTGAGCGTTGCTTGAGAAATTGCGCATCAAAATAATAGGCAATTTTAAAGGTCGGTAGAGCGGCCTTTTTTGTTTAGCCAGCAGGGTATTAAAAACCCTTTTTATTTTTGTTGAACAGTAGAGTATTTAAAATCAATAAGTTATAAACCACCTAAAAAAGAAGGTTTTTTTTACATTATTTTGTTAGGTGTTTGTATTCAAATGTTTTTGTGTTAGAAATTTATA # Right flank : GTTTGTGAAGAATTTTAGGGTCTAACGTGAAGCTGCTTGTGCAATGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAATGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGGTAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGCTGTTTTTCATAAGGTAAAAATAGGTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 740720-741408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015412.1 Pseudoalteromonas luteoviolacea strain S4054249 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 740720 28 100.0 32 ............................ GTAGTAATCCCACCTGCACCTTTAACATCAAG 740780 28 100.0 32 ............................ AGGATATATCAGCAGATTTGCGTGACGCGAAC 740840 28 100.0 32 ............................ AGTAGAGAAACAGACCCATGCTGTGCGATTCT 740900 28 100.0 32 ............................ TAATTGTTGTGTTTGTGCCGTACCAAATTCGA 740960 28 100.0 32 ............................ AGACAGCTCAATTCAAAAGTGGAAGACTTTGG 741020 28 100.0 33 ............................ TCCGCTAAATGGACAGTAAGTTCCTTTTGATAT 741081 28 100.0 32 ............................ GGTTAAATGGTTTTCAAGTAAGATGGAGGGCG 741141 28 100.0 32 ............................ ATAAGGGAAATTGACCAGATAATCATACAGAC 741201 28 100.0 32 ............................ TGTTGTATCAGCAACGAATGAAATGCTTGATA 741261 28 100.0 32 ............................ TTTATTCTCTCAAGCACAAAAACCTATGTTGT 741321 28 100.0 32 ............................ ACATGACAAATTCACTGGTTTTATTCCAATAG 741381 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 CTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAATGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGGTAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGCTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTATCTTTTTTGATTTACTCTATA # Right flank : ATTTAACAGTCCATGGTCGTTAGCGGCTTTCAACTCCGTGTTGGAAATATTCCGGTTCACTGCCCTAAGGCAGTTTAATGCATCCGTGATAAAGTGTTGGTCTAACATGGAGTTGCTTGTGCAATGCAGTGACAATGGATCCTGATATTCATGAGGATGACGAGTGTAAGATAGTGGTTTTTTCCTCAACAGATTGTTGTAACTTCACTTTTTTCATTTATTCTTATTTTACTGCCGTGCAGGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTACAACTCTGTACTAGCTTTGTACACTATTTCACTGCCCACAGGCGGTTTAACGTGTTTGTGAAGAATTTTAGGGTCTAACGTGAAGCTGCTTGTGCAATGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 742311-744799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015412.1 Pseudoalteromonas luteoviolacea strain S4054249 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 742311 28 100.0 32 ............................ GTTGAAGAAATGGGCGATTTAAGCCGTCACTC 742371 28 100.0 32 ............................ GCCCATCTAGCACCAGCCTAAAAATGTATTCA 742431 28 100.0 32 ............................ TCTGCAATCTCGAACTGCTCGTGTCCATGCTC 742491 28 100.0 32 ............................ TAAATAATCCAATTCTGTATCCGTTGCCTTGG 742551 28 100.0 32 ............................ AGATACCCCTGCAAACTCGCCATTCATTTCGA 742611 28 100.0 32 ............................ ATTATGCGATCCCCAGTATTTGGTTCTTAATT 742671 28 100.0 32 ............................ ATTCTTGGCACTAGCACACCATGCACACACAA 742731 28 100.0 32 ............................ AATAACGCGACCACAATCACCGTTGCAATTGC 742791 28 100.0 32 ............................ GTTATCCAGCTCAGTTGTCGCTGCTTGCTGCG 742851 28 100.0 32 ............................ ACTTCGAGTCTTTGCTGTCTTGCATATCTCGT 742911 28 100.0 32 ............................ ACAAAAGGATAAGCAAAACGCAGTAACCACTT 742971 28 100.0 32 ............................ ATAAAATCATGCACATTCATTCATATGGCATT 743031 28 100.0 32 ............................ GTTCACAAATACATTCGTAACGTCTGTCAGTT 743091 28 100.0 32 ............................ AACTGGGTTTATAGTCCGACAATCACCAAAAT 743151 28 100.0 32 ............................ GCATGCTGAATTAGCTCATAACGTGTTGGTGA 743211 28 100.0 32 ............................ GCATGCTGAATTAGCTCATAACGTGTTGGTGA 743271 28 100.0 32 ............................ CCGCGTGTTGCTTGGGCAAAGCGAAAACAGCA 743331 28 100.0 32 ............................ GGGATGAATCACTTGCCGTTCCAAACCTAAAT 743391 28 100.0 32 ............................ GTATAAGCGCGCAATGTCTAGCGCGCTCAATT 743451 28 92.9 32 ...........TA............... GATGGTGGCCAAAGGCATTGCGATGGTCGGCA 743511 28 92.9 32 ...........TA............... TGATGTGGGCAGCACCACACAAGGCACTTGGC 743571 28 92.9 32 ...........TA............... TAAAAATAGACCCGATCTACAGATTTTTAGAG 743631 28 92.9 32 ...........TA............... TATTTCTGGGGCGTCATGCACGCTTTGGATGA 743691 28 92.9 32 ...........TA............... GTGATGAACAAATTAAGGGGCTTTTAAACTTG 743751 28 92.9 32 ...........TC............... TTCTTAAATCATGATAACGCAAGTCTTCAATC 743811 28 92.9 32 ...........TA............... GCTGCACGCGTTCATGTTGATAATGGCGCGAA 743871 28 92.9 32 ...........TA............... ATCACCAACTACTATGAAGCGCGCCAAATGGC 743931 28 92.9 32 ...........TA............... CAGCGCTTTACTTATGCCAGTGAATGCGCTGT 743991 28 92.9 32 ...........TA............... GCTATTACTAGATGTTCTCAAATCAAACAGCT 744051 28 92.9 32 ...........TA............... ATTCTCGAACTAACTCAATCCAACCTTCAGTA 744111 28 89.3 32 .........T.TA............... ATAATGTGACTAAGCTTGGAAAAGCTATAAAT 744171 28 92.9 32 ...........TA............... AGTTCAACCAAGAAAAAGCGCAAGCGTTCGCA 744231 28 89.3 32 ...C.......TA............... ATCATGGCCCGTGCCTATCTTCATTCTATTTT 744291 28 92.9 32 ...........TA............... TACAAAACACGGCAAAGATAATCTACTCCGAG 744351 28 92.9 32 ...........TA............... TGCATAAACGTGTCCCGTTTGTGATTGAGTTA 744411 28 92.9 32 ...........TA............... TAACAGAGCAGACGAACTTATACAGCAAATGA 744471 28 92.9 32 ...........TA............... TATGCACGTATTTGCACAACGTATGCAAAACG 744531 28 92.9 32 ...........TA............... AGTAACAAGCAAAGTATTAAGCACTTAGATGC 744591 28 92.9 32 ...........TA............... TGAATATAAATGGTCAAGAGGAATAGCAAGAG 744651 28 92.9 32 ...........TA............... TTTGGCAATTATTGCCTCAACGATATTAGCCT 744711 28 100.0 33 ............................ CGTGCAGCATTCAAAACACTGATGACATACCGA 744772 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 42 28 96.0 32 CTTTACTGCCGAGCAGGCAGCTTAGAAA # Left flank : TGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAAGGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGACAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGTTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTGTCTTTTTTGATTTACTCTATA # Right flank : GATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTTCAACTCTGTACTAGCTTTGTACATTCCTTCACTACCCTACAGGCAGTTTAACGTATTCGTACAGAATTGTTAGGCCTAACGAAGAGCTGCTTATGCAAAGCAGTAAAACTGGATCCTGATTTTCATCAGGATGACGGCGCGTAGAGAGGCGTTGTTAAAGCCGCTTTAGTCATGAATGTTCGATGTAACCAAGCTCCGTAGATGGATGTCAGCTCCGTGCTACCTACACTCACTTACAATGCCATATAAGCACGTACCCACAAGTCTACACTTTCTCACCCCCGTCATTCCGAGCTTGCCTCGGAAACCATTGGCTTTTTCGATGAGAGGCCATTAATAAAGCTTGTAAACATAATTTCTCTTTAAGCCGAGCATCATGGAAATCGAGATCGATTCTCACTGGTAGGTTTGTGAAAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGAGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 755475-757149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015412.1 Pseudoalteromonas luteoviolacea strain S4054249 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 755475 28 100.0 32 ............................ AAAGTGTCACGCCGTTTTATCTTACATGCCAC 755535 28 100.0 32 ............................ CTAATAGCAGTGAGTTTAGAGACAGTGAAATT 755595 28 100.0 32 ............................ GCTAGATGCTGAAATATCAAGCTATACAATGG 755655 28 100.0 32 ............................ TACGCGATAAGGCGTCTCTTATGCGAACGAGC 755715 28 100.0 32 ............................ GTTTGCGCCAGCTGCCTGACGAGCAAATTTGC 755775 28 100.0 32 ............................ AATTATCTGTGGAATACCAGAAACAACACCGT 755835 28 100.0 32 ............................ ACTAGTAACCGAGTCACCTAAAACTGTACTTT 755895 28 100.0 32 ............................ TGTTAGCACTGCAAAAACGGTGTTGCATTTGA 755955 28 100.0 32 ............................ CTAACTCACTACTATCACGCCCAGCGTTCTCT 756015 28 100.0 32 ............................ GAACTGAACGAAAAGCAGTTGGCCGATCTCAT 756075 28 100.0 32 ............................ TTTAAGACTTACTTTTGCTTTCACAAAGTTAC 756135 28 100.0 32 ............................ TAAGTCCATAACTATCGTGTATGCTCGGCCTA 756195 28 100.0 32 ............................ CCACGACATTGGAGATATGCCAAGTTAAAACT 756255 28 100.0 32 ............................ TACTAAGCCCATTTTGATGAGTACAGGCACGG 756315 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 756375 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 756435 28 100.0 32 ............................ CTAAAGATAAAGTACTCAAAAGTGTTAGCTAC 756495 28 100.0 32 ............................ TAACATTTTTGTGGGTGAACTGATCAGTCACC 756555 28 100.0 32 ............................ CCACATGCCTTGCATCTGTTGAAACGTATCTT 756615 28 96.4 32 ..................A......... GTTTACTGAATATACTTACGACACGTTTAGTA 756675 28 89.3 32 ...........CG.....A......... GTGGGGCGTAACTGGGACTGGAGCTATCAACA 756735 28 89.3 32 ...........CG.....A......... TATCAGCAAACAGCTAAACGACGAGCATAGAT 756795 28 89.3 32 ...........CG.....A......... AAAACATCAATTTCTTTTGCAGTGAGGTTCAT 756855 28 89.3 32 ...........CG.....A......... TGCCAGTGGACGATTTAAAAAGCATCTTTTAT 756915 28 89.3 32 ...........CG.....A......... CAACTCCCAAGCCAGAGTGCCGCATTGCAATA 756975 28 75.0 119 ..........GA.T....A......GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGTAAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCTCCGTGTTGGAAATATTCCG 757122 28 71.4 0 G....T....CC......A.T...TT.. | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 27 28 95.6 35 CTTCACTGCCATACAGGCTGCTTAGAAA # Left flank : TACCAGATGATGTCAGCTATGTGAGTTTCACACGAAAAAACGTTAAAAGCCCTACTAGGATTGAGAAAGATATGGAAGAGCGTGCTAAGCGGCGAGCACAAAAAAGTGGCAAAACGTTTGATGAATGCATGACAGAGCTCGCTGAGACTAAACCTGGTCCATCCGATTTGCCTTTTATCTTTTTGCATAGTCAACAGACTAAGACTCGAACACCAGACACAAATAGTAAATACCCACTCTTTATCACCATGGAAGGACGCGAGGGTAATTCACATGGCACATTTGACTGTTACGGGTTGAACGCGAAGGCAAATGATGAAAATGTATTTGGGTGCGTACCTCAGTTCTAATAAATAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATCTGCATAAAATACAACGAGTTGCGATAGGCTGTTTTTAATAAGGTAAAGCTAGGCTTTTTTACCTTAATAGTCTGTTGCATCTAGTCTTTTTTCATTTATTCTATA # Right flank : ATGTATTCGTGATGAGTTGTTAGGTCTAACGTGGAGTTGCTTGTACACGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGGGTTTAAGATAGGTGTATGATTTTATCTAAGTAGTGCATTTTGTTATGCCTACTGAAAGCTACTGCCCCATAGGAAGTGTATTATTGTTAGCCGTGATGAGTCGTTAGGTCTAACGTGGAGCTGCTTGTGCACGCAGTGAAGCTGGATCCTGATATTCATCAGGATAACGGGTTTAAGATAGGAGTTTTGATTTTGCCTAAGTGGCGTAATTTACTATGTCTACTGTAAACTACTGCCATACAGGCAGCTTACAAATGCCGGAGTTGTTTCTACACACACTAAAACCTTTACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCATTATCTCACTGTCTCACTGTCTCACTATCTCACTATCTCACTATCTCACTATCTCACTGTCTCACTGTCTCACTGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCATACAGGCTGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //