Array 1 472-953 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXS01000031.1 Corynebacterium diphtheriae bv. gravis strain 4720 Contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 472 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 534 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 598 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 662 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 726 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 790 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 854 36 100.0 28 .................................... CACAAAGTCGCCTAGATTTAATCTAGTT 918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 96.9 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : TCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATCA # Right flank : CAGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 61642-61914 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXS01000028.1 Corynebacterium diphtheriae bv. gravis strain 4720 Contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61642 29 100.0 32 ............................. GGGTCGGGTCTGATGGCATGCCGGTCGCTCGC 61703 29 100.0 32 ............................. TTCGGCAGCGTCACGCGCAGCGACCTCGCTTT 61764 29 96.6 32 A............................ AAAATGTGGGGAGAATCCCCGCAATCTGAGCT 61825 29 100.0 32 ............................. TCAGCAAATAACACCCGTGGATGGTGCTTTAA 61886 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GGAAATACCTCCGCGTGTGCGGAGAAGAC # Left flank : CCCGGTGACGATCACGCGCATGCCCTTGGTGAGGGATTCTGCAACGTTTTCGGCAGCTTGGTGCCAAATGTTGCACTGCAAGAAAACCGCGTCACCATCTACCCACTGGTTCGACCGGGAGTCGTACTTCTTGGAGGTAGAAGCAACACGGAAGCTGGTTACTGCTACACCATTAGGGGTGAAGCGAAGTTCTGGGTCTGCAACGAGATTACCAACAATGGTGACGTTGACTTCGCCTTGTGCCATTTTCTTTGTCCTTTGATCTAGTGCGCGTTGAAGGTATGCGCGCCCCACCACGCAGCACTTACACTGCTTCTTCTATAAGTTCCCGCACTTGCCCATCTTCAATCACAATGCCATGTTCACCGGTTTCATCAACCAGCTCAACCCACACCTGGAATCCTGTTTCTGTCGCAATATCGGAGAGAATCTTCTGAGACTCGGAGTCCATGAGCGAGCCATCAGACACACGCATCACACGAATATTTGGATTGCCTGCC # Right flank : CTGCGCGGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGTGCGGAGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 115678-117050 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXS01000040.1 Corynebacterium diphtheriae bv. gravis strain 4720 Contig_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115678 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 115739 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 115800 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 115861 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 115922 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 115984 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 116046 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 116107 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 116168 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 116229 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 116290 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 116351 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 116412 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 116473 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 116534 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 116595 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 116656 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 116717 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 116778 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 116839 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 116900 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 116961 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 117022 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : TTAAAGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //