Array 1 1129380-1127325 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIO01000001.1 Veillonella criceti strain NCTC12020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1129379 35 100.0 35 ................................... TGTATAAGGGTGTTCCAATGGGACCATTTGAGAGC 1129309 35 100.0 37 ................................... TAATAATAAGGAGGCCATACTACATGCATAACCAATA 1129237 35 100.0 34 ................................... ACGAAAATGGTGAAATTCGTGAAAAATGGAATGG 1129168 35 100.0 35 ................................... TCTGAGTGAAGTCAATATTACTATAGGCATAGTTA 1129098 35 100.0 33 ................................... TCCGCATAATTAAATGATAGTAAATTCATACTA 1129030 35 100.0 34 ................................... TGGCGTTTGGCTAAAGCTAAATTCGCCGTTAATT 1128961 35 100.0 35 ................................... TCACGCCGTCAGTGGCGTTCCAATCAGAGCCGTCC 1128891 35 100.0 35 ................................... CCACTACCTCCCCGAAAGACTTAACCACTGCACCG 1128821 35 100.0 35 ................................... TTTAAAGCTTCAAATACTTGTTGTTCTACTTTAGA 1128751 35 100.0 31 ................................... TCCCATATTACAGGGATCATGTCAGGTTCTA 1128685 35 100.0 32 ................................... CGTCAAAATCTTCAAACAATGAAGAGCTTTTC 1128618 35 100.0 36 ................................... GTTTGTGCGCATTCATTACCGATAAAACCAGATTTA 1128547 35 100.0 35 ................................... TGAGGCAATACAGTATTGACTTTTGCACGTACTCG 1128477 35 100.0 33 ................................... CAATAATATTATCCATAATAATATCCTTTCTAA 1128409 35 100.0 34 ................................... TTCATGTCATTTTCCTCTTATAACCAGATATATA 1128340 35 100.0 32 ................................... TAATAATCTCGCCTGGAAAATCCTTAAGCCCA 1128273 35 100.0 35 ................................... TAAATGAAGAAGCAATACATTTGCTTTTAAATAAC 1128203 35 100.0 36 ................................... GGTTCGATCGTCCGAATTCCTTCGGACGTGTTTACA 1128132 35 100.0 37 ................................... AAACCCAATTGACAATAAAATTGTAATAATTACTAAA 1128060 35 100.0 35 ................................... GTCATGTCACTAATCATATTAACGCCGGCTTTAAA 1127990 35 97.1 35 .......T........................... CCAAAGATTGCAATGTCCACGAGTTCTGGCTCTGT 1127920 35 100.0 33 ................................... GGTGTCCCTGTAATTAAAATTTTGTAGGGTATA 1127852 35 100.0 32 ................................... AAATGCTTTCTTTTGTTATGCCCAGGTCTTTA 1127785 35 100.0 37 ................................... TGAACGGCTCTTAATTCTAACATCTTTCCGTTAAAAG 1127713 35 100.0 34 ................................... AAATTACAGTCTGATTCCATAAACTCTTGATAGA 1127644 35 100.0 39 ................................... AATTTTTAATAAACTCAATATAATCAGATACATATTTAT 1127570 35 100.0 34 ................................... TAACTGGGATCATTGATGGTTCTAAGACTTGGCA 1127501 35 97.1 37 ................T.................. GACATTCGAGTTGCCCCCTGAGTGAGCTCTTTTTTGA 1127429 35 100.0 35 ................................... TTAGTCAAGTATAGTGATTACGCCGCTTTGTTCTG 1127359 35 82.9 0 ..................A.....AA..G....TA | ========== ====== ====== ====== =================================== ======================================= ================== 30 35 99.2 35 GTTGCAGCACTGCTTACCGCTTGCGGTATTGAAAC # Left flank : GCATTAGAATTTGAAAGTATAAAAATTAGATAGGTAATTAATACGAATTAGAGGTTGTAATAGAATGATAGTTTTACCATTTATTTTGTTATGACCTCTAATTTTAGTATAAGTAATTTTAGTATAAGACTTTAGACTTTAAATTTTAGATTTTAGCTGTTAGGGTTTAAGGTTTAAGGTTTTCTTTAATAGTAAAAATCAAAAATATTGTTACAAATAGTGTAAGTATGGGCTCAATTGATTTTTATGTAATTTTTAAGAAATCTATCCTGAAATTGACTAAAAGTGAGAAAACCCTTATAATATCAATATAGTTAGAAAATAGATTTCTTACACTTTATCAGTAATTGAGAACGAAGTATTTATCAGTGTTTTGGTGAGTTGAAACTATTTCTAAGAAGTAGCAAAACACAAGATTTGAAAAATAGTGTTATAGAGTTGCTTAGGTTTCTAAAATACTGTTTTTGAGCTAGTGTTTATGCGAAGTTTGAGATTATAGT # Right flank : GTTATTGCATTAAGTAAAAATGTATTAGTTAATTATGTAGAAGTCCTCTATATAGATTGAGCTGATGATTGGACTTACTTTATAAATATTGATTTAGGGGATTTAAATATCCATCTTAATGTTTTTTGTGCAAAATGGGGGAAAGGTATGCCGATACTGTATTTATTATCGCCAGGGGCTGTAGCAAGTAAAAGCGGAGGGCGAGTTGTGGTTGCCAAGGATGGTAGTGTTCAATATAGTATACCCTTAAAAACAGTAAAACAGGTCGTAATTAGTAAATATGCACAAATATCGACTCAACTTATTGCTGAATTAATTGTTAATAAGGTTATTATTATTTATGTAGATTATAAAGGTAGAGTATTATCTTATTTGGGCGGACATAGAGTGGGGGCAAATAAATTAATCCAGCAAGTAAATTTATTTACAAACTCTGTTTATCAGTTAGAGTTGGCACGTTATATTGTTAAACATAAAATTATGGCACAAACAGAGCTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCACTGCTTACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 1403365-1400838 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIO01000001.1 Veillonella criceti strain NCTC12020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1403364 33 100.0 35 ................................. TTTGTCCTGCACGTTTTGCATCAGCTCTAGCTCTC 1403296 33 100.0 34 ................................. CTTCGCAACTTGTTAACTCCGTATTAATCCATAG 1403229 33 100.0 34 ................................. CACCCGCCTGATTAATTTAAAGCCACCGAGTTTT 1403162 33 100.0 34 ................................. ATGGATATAATTAATTACATCTTTCTTTTTCATA 1403095 33 100.0 34 ................................. TTACAAGACGCGTTTAACCACTTTGTGGGTACAA 1403028 33 100.0 35 ................................. TTGACCTTTGTCATTTACTTGATATTTCGATTGGT 1402960 33 100.0 34 ................................. TTTATCGAATATAAATACGATTACTATCAGGTAC 1402893 33 100.0 35 ................................. TGCATTATCTCCATAAATAAGACGCTTTATTTCCT 1402825 33 100.0 34 ................................. TAGTTCTCTGCCCTACACGTTTTGCGTCATATTT 1402758 33 100.0 34 ................................. TAACTTCATATAGCTAGTCATGTCCTCATCTTGC 1402691 33 100.0 36 ................................. ATTGCTATTGTCGCTCCACGACGGTACCATATATAG 1402622 33 100.0 34 ................................. ATAGCTTACGCCTCCACGGTGGGGCGTAAGTAAC 1402555 33 100.0 34 ................................. CACCCCTCTCCGATTATGTTTATGGTGCCGACGT 1402488 33 100.0 34 ................................. ATGCTCAACCGTTAATCCGAAGTCGTCAATGTAA 1402421 33 100.0 34 ................................. AGGGTAAACCACTGTTGCATAATTGCGTGTCCGT 1402354 33 100.0 34 ................................. TGTGATTTTCCAAGTTTTCATAGTTGTAGTCTCC 1402287 33 100.0 34 ................................. GCCAAAAATAGGACTTACAAGTTTTTGCAAGTCC 1402220 33 100.0 34 ................................. CTAGATATTAAGATAAAAGCTAAGCCAAAGACTA 1402153 33 100.0 35 ................................. AACTGGAGCGTAAGCATTGGCGTGCTTGCGCTCTC 1402085 33 100.0 33 ................................. CGTTCTCACTCTTAAAGGTGAACAAGGCATAGG 1402019 33 100.0 35 ................................. CCTTTGAATACCTGCGTACTCATGGTTAAGACACA 1401951 33 100.0 34 ................................. TTTCCATGCTCTGCACTACCACCAACTATTTCAC 1401884 33 100.0 34 ................................. TAGTACGGCTACCCTTTGATTTATCTTTTGAGTT 1401817 33 100.0 35 ................................. CTGTTGCAGAAGGATATAAACAGGGTTTAAAACGC 1401749 33 100.0 35 ................................. ACAAACAACTCAAGAGCGCAGGCACGCCAATGCTT 1401681 33 100.0 35 ................................. TTCCCAATCTTCACTCATATTGGTATAAGTTCTAC 1401613 33 100.0 34 ................................. AATCTAATTTGAGTAATGATATTTCCTCTAAGTA 1401546 33 100.0 34 ................................. ATGTAATAAAAGAGCTGGAAGCTAAGGATGAAGA 1401479 33 100.0 35 ................................. AAAAAGCTAACCAACAATAAGCACACCACCCACGA 1401411 33 100.0 35 ................................. TCCATGGTATAAGTTTTTGGTACATTAAAAATTCG 1401343 33 100.0 35 ................................. TTCTGCTGCCTCATCTAAATCACTTGCCAGCTCAA 1401275 33 100.0 34 ................................. GGGAGAAAAATATCTGTTCACACGGCAAAAAGAA 1401208 33 100.0 34 ................................. GATTGTTTCAGTTTTGTTTGCTGGATATTTACCA 1401141 33 100.0 35 ................................. TCTAATTGCCTGATGTTTGTCGCTTGCAATCGCTA 1401073 33 100.0 35 ................................. TTTGAGTAGTGTAATCAAGTCGCATGAAACTAACA 1401005 33 97.0 35 ................................A GGGGATATTTTAACGCGTGTACGTCGTGTAGCATT 1400937 33 100.0 34 ................................. TTTATACGGATTAATCCATGGCTGACCTGGCATA 1400870 33 87.9 0 ..............G.......ACT........ | ========== ====== ====== ====== ================================= ==================================== ================== 38 33 99.6 34 GTCTTGTGCTTATGAGTGCAAGTGGATTGAAGT # Left flank : AAAAATTCATTGTGATGGAGTGCGAAAGGTAAGTTGTTTGTTAAAACTAAATACATTTCGCACTCTTTTTTGTATGTTGATAATTTATTATGAGTGGTAGTATTTATAATTATTAGTTACTATATAGCTATATTATAAATGTAGGTAAGAGGGGATATTGATATTAATCGTGTAGCCGTATCCAATTTTTAGGTTTTAAAAATGTGTTTAAGAGGATTGAAATCGTTAATTTCTAATATGGCGTTTATAGAAATAGTGTCTTATGCATATATGTAAGGATTAAGAAATAGTAAGTAATAATGTTAACAGTATGTTACTATTTTTATTATTTTATATTTTGAGGTGCGAAGGTTAGATGGATTGTAAAATATAAATAGTTTCGCACCAATTCTTGATGTATTTAATAATTATATGATTATAATAGGAAAATTTTTATAAAAAATATTAATGATAAGTTGTAGTTTTGTTGTGTATAGTTACTTTTACTACTATATATAGCT # Right flank : ATGTGTTGGCGTTTGTTGTTGTATGCCATACTAAAGCTTAATGTAAAAAATGACTTTTATAGTTAGGTTATGAGGAACGCTATGATTAACAAAAAATATACTTGTAATATTTAAAGTTACATTTTATAATAGTGTTGTAATAGTATAAATGGTAGCAATATAGAGTGTATGTTAATAAGATATAATTTAATACCTTATGTGATGAGTGACAGAGTTTGAGAGGTGTTTAATATGGCAATAGAAGGTCAAACTAAAAATATCAATGAAAAAACTCCAGTAGAAGCGATGTCGCCAGAGGGCGTAATGAAGTCTACAAGTAAACGTATGCCAGTTTTATTTATTGGGCATGGTTCTCCTATGAATTTAATCGAAGAAAATCCTTGGACTAAGGAATGGGAAGCAATTGCAAACATTACGCCTAGACCTAAGGCGATTTTAATGATTTCAGCGCATTGGTATACGGCTGGGAGTTATGTACAAGGTGATGAAAAACCAGCTAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGTGCTTATGAGTGCAAGTGGATTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1693390-1697664 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIO01000001.1 Veillonella criceti strain NCTC12020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1693390 33 100.0 34 ................................. ACCTATCTTTTCTTGCAATTGTAATCGTTTACAA 1693457 33 100.0 33 ................................. TCTTCGGGGTATAAACTCAATGCCAAAGTTGCT 1693523 33 100.0 34 ................................. ATCAATATAATAATAAGATTGGAGCATATTAACT 1693590 33 100.0 34 ................................. ATTATTCCATCCGAGTAGATACGCTAAAATTGGC 1693657 33 100.0 34 ................................. ATCAATATAATAATAAGATTGGAGCATATTAACT 1693724 33 100.0 34 ................................. ATTTCTTTCGATACTCCACTTTTTGGCATAGTAA 1693791 33 100.0 34 ................................. AATTATATCCATAGTTTTTCCGTTAAATCTATAG 1693858 33 100.0 35 ................................. TTTTCGATACAGATACAAATCCATATCTTCTAGGC 1693926 33 100.0 34 ................................. AATTACTTCTTTCATTCTTTTTAAATCTACATAA 1693993 33 100.0 34 ................................. TTGATAGTTTGCAATAAATCTTTTACATCTCGGA 1694060 33 100.0 34 ................................. TTCTTCCATGGTTACATCAACTTCGATGTTATCG 1694127 33 100.0 34 ................................. TTTTCAGCCATAAAATTACCTATAAATTATTAAA 1694194 33 100.0 35 ................................. TGCTAATCCACCCCATGACCCACTCGACGCTAAAT 1694262 33 100.0 34 ................................. TTCTTAATGTGCGTGAAATCATATACCATTCCAT 1694329 33 100.0 34 ................................. CTTTTTAATTTATTAAAAAACTCTACATTCATAT 1694396 33 100.0 35 ................................. ATTCTATATCACATATGTTCTAGCAAATGAGCCAA 1694464 33 100.0 33 ................................. ATTTCTTTCGATACTCCACTTTTTGGCATAGTA 1694530 33 100.0 34 ................................. AATTATATCCATAGTTTTTCCGTTAAATCTATAG 1694597 33 100.0 35 ................................. TTTTTCTAAAGTTTGCCCATAGAAAACGCTTACTG 1694665 33 100.0 34 ................................. ACTTAAACACTTTAACCAAATCAGCTCTATACTT 1694732 33 100.0 34 ................................. ATTTTTTTGTACCCCCTGAAAGGACTGATTTTAT 1694799 33 100.0 34 ................................. TCCCTCATGACAAAAAAGCACAAAACTCAATAAG 1694866 33 100.0 35 ................................. TCCACGATAATCACTGTCAATAACACCAATACTAT 1694934 33 100.0 34 ................................. TTTTTGCCCTAAATACACCTTACCCAAAAAGATT 1695001 33 100.0 34 ................................. TTTATCAATTCCGCTTCTTCACGAAGCAAATCAA 1695068 33 100.0 34 ................................. CGTTACAATAGGGGGTAACGCATGGATAAAGTAA 1695135 33 100.0 34 ................................. TATTACATCGTCGATGTCAATTTCTGCTTCAAAA 1695202 33 100.0 34 ................................. TGACCTTGCCAGGGGTATTTATTTTTTCGTATAT 1695269 33 100.0 34 ................................. TATTTTTGATAGGTGGTGCAAAATGAATACAACG 1695336 33 100.0 35 ................................. ATTTTCAAAACTTTGAACTATCCAAACATATTGCC 1695404 33 100.0 34 ................................. AAATTACGCTTTTCCTCTTGTTATGTCAACTCAA 1695471 33 100.0 34 ................................. TTTAAACGAACGTTTCAAATATATCTCATCAGTT 1695538 33 100.0 34 ................................. TTCCGTTGATGCGGTCAACTGCCGCATCAACGTC 1695605 33 100.0 35 ................................. ATAACATCAATGTTATACAACTCGCGCCCGTCAAC 1695673 33 100.0 34 ................................. ATTTATGAGTGCAAATACGTATAATTGGTGGATT 1695740 33 100.0 34 ................................. TTACGTCACCGGTGTTCATGGGGTAACCGTGGAC 1695807 33 100.0 34 ................................. ATTTATGAGTGCAAATACGTATAATTGGTGGATT 1695874 33 100.0 35 ................................. AAAAGTTACTTCACCATCGTTTAAAAATTTTTCAA 1695942 33 100.0 34 ................................. TAATAAAGTCTTTCAACAGTTCTTTTTCTTCTTT 1696009 33 100.0 35 ................................. ATCACCTCTTGGAGCGCGTCGTCGATGATGCCCTT 1696077 33 100.0 34 ................................. CACCTTGGCTCGTTAAGCGCCTCGCCCTATTGCA 1696144 33 100.0 35 ................................. TTGGCTATCTAAAATTGCCTTGCGATACACGTCCT 1696212 33 100.0 35 ................................. CATAATGGTAATATTTTTACTTGGCCAACGCCAGC 1696280 33 100.0 35 ................................. ATCAAAGATAGTTAATAGCAAACCTTGCTCTGCGA 1696348 33 100.0 35 ................................. TTGGCTATCTAAAATTGCCTTGCGATACACGTCCT 1696416 33 100.0 34 ................................. CTGTGCCACCTATCGTAATATAATTTGACATACA 1696483 33 100.0 34 ................................. CACACGCTTAGCACCCGCTTCCATGATTTTACGA 1696550 33 100.0 35 ................................. TCCCTCATCACACTCCTCGTTAAATACCGGCACAG 1696618 33 100.0 34 ................................. TGCGCCTTGTACGCCAACAGCGATTTCATAGCTT 1696685 33 100.0 35 ................................. TATAAAATTAAAACCGTCAAAAACGCTTCTAGCAT 1696753 33 100.0 35 ................................. CTCGAGCGGGTGTGCAAGGAGAACGGCCTATGCGT 1696821 33 100.0 34 ................................. AATTTTATAATTAGAAAAATATTTAAAAACTAAA 1696888 33 100.0 34 ................................. ATTGATAATTGCAAATGTATAAAGCTGATGGATT 1696955 33 100.0 35 ................................. AATAATGCGCTCGGGCCTACCAATCAAGCCTGTTT 1697023 33 100.0 34 ................................. TTTTATTCCTAATTCTTTTGCCGATTTTGTTCTT 1697090 33 100.0 35 ................................. AATAATTGAGTTGCTTTTATGTAATTTTTACCTAT 1697158 33 100.0 34 ................................. TCTCATACATTGATATTGTAGAGTTTTCTAAGTT 1697225 33 100.0 35 ................................. CAGTAAATCCAGTAATTTGTCGTCTGATAGGGTGC 1697293 33 100.0 35 ................................. TCGTATAAATCAGCTAATAACTCTAATAAAGTAGC 1697361 33 100.0 34 ................................. TATTTAATTATACCATACAATAAACTTAGACCTA 1697428 33 97.0 35 ....T............................ ATGTGCTAAACATTGAGCGTAGCGGGCAGGTTAGG 1697496 33 100.0 35 ................................. TCTCTTTTGACCCTCAATTTTGGGGCAAAAAATAG 1697564 33 100.0 35 ................................. CGCGCTTTGGCGTAATCCCTTGTACGATTATCGCA 1697632 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 64 33 100.0 34 GTCGCTCCTCATTCGGGGAGCGTGGATTGAAGT # Left flank : ACTGATGGCTATTCGTATTCGGAAGATGTGCCTGCCTCTAAGCCTATTATTATTCCTATGAAAAAGATTATTATGACGCCTGCGGAGGCGAATGAACTACGAGATGCTAGTGTAAATGAAGCGGTACAAGCTTGGCAGGATAAAAATGTTAGTATTGATACTGAAAAGAAAGAAGAGAATTCTGAGTCATCAAAACAAAAAAATTCAGATGATGTGGATGGATTCTTCAGTTGGTTTTAGTTATTAGTATTCAGTTTTAAATACTTGTTGTTTTTAGGGTATTTGTAATAATAGTTTTTAATTATTTTATATAGTGATTTAGTGCTATTTTGTAATTTATTTGTGCGAATATGTAGCATATTGTGAAACTTAGAACCTTTCGCACTAGAATTTGTTTAAATTAATTTGCTAGATTTATATATACTAGTAAATTAATTGTCTGAGCTTATGAAAAAGCTCAGTTTGCTGGATATAGTGGATCCTATCTACTATATGTAGCT # Right flank : TCCTGATGTACCAGCGATCATTGGGCTAAAGAAGCATCGCTCCTCTACTTGAAAAGTATATAGTTTTAGCCTTATATTTTTATGATATTTTGAAGGTAAAAGTATTGCCTGTTCTCTATCTTTACTTTTTTATCTTGGTTTGTTATATTTAAATTACTAGATGGGTGGAGCTGAGTATCCAGTGTTGAACCCCTATCACTAGAGGGCGGACGGCGATACTGCGACAGGCCGCCTCTTAATTCATTTCTAATACTATACTATTGCTGACGTATATAATTGCGTCAGCTTTTTTGTCGTATAACCCTCTAATCTCAGATTTTGTAATAGCGGTTAATAATAAAAATAGCAGAATATAAAATAGTTTCAGGTTATATAAAGAATATTTTCAAGTATATTGTTTATTAGCACAGTCCTTAAATTTTAAGTATAAAAAGAAACCACTGGAAGGACGCAATCTATGAAAAACATGGCACTCTTCATATTAAGGCAGCCAATGTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCATTCGGGGAGCGTGGATTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //