Array 1 781-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01001171.1 Streptomyces sp. SA3_actF contig01332, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 780 30 100.0 31 .............................. AGCACGCGCCGAGCGCTGCCGCCCGCGCGTA 719 30 93.3 31 .........................G..T. TGCCGCTTTTCGCGGCGGCGGGCGCAGCGAA 658 30 93.3 31 ...........A....T............. CCGAGGGCATCCAGCAGTGGGCAACGCGCCT 597 30 96.7 0 .......T...................... | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : ACCCGCCCAGCCCGGAAGTGCTCGCACGCATTGCC # Right flank : CGTCGTCAACGGCGCGACCCGGGGGCTGCTTCCTGCGTGCGCAGATGTAGTCCCGCCCCAGCGGAGGCGTGGTCACCAACGGCGAGCGCTCCCGGTACCTGACGGCTCCCCTCCCGCCCCATCAACTCCCCTCCCCGCCCCCCTACCCTCCCCCCTCGCCTCCTGCTAGCCTCCCTCTCGCCCGGCCCAACTGGTCCTACCAGTCGGACCGCCGAACCATCCGCCCCGAGGAAGCCCCCGCATCCGCCCACACCCCCGTCCTCCCCCGCCCCAGAGAGGTGGCACAACGATGTCCACCCCCCGGCCCCCGGTCGGCCGCCCCACAAGCCACCAGCCCCCGACCGGCAACCCTGCCAACCCTCCAGGCCCCGAGGCCCCGGCCTCCCGCCCGGCAAGCAGCACGCCCGCGCGCCCGAACCCCCAGCCCCCCACCCCGCACGCAACGCACCCCCCACCCCGCCCCCCTGCACGCACCGCCCCCCGCTCGACGAGCCCGCATC # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10456-9940 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01000159.1 Streptomyces sp. SA3_actF contig01348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 10455 28 82.1 216 .C.A........CC..........T... GGGCCGCCGGGCGATCGAGTGGACCCGCTACCTGTCGGCCCTGCGCTGGTAGGGATCAGTCGCGCAGCCGAGCAGCTGTCGGGGGTTACGGTGTTGACGTGGAGGGTGAGAGCTGGTGGGGTCAGGCGGTTGTTTCTGTTCTGGGCTCAGCGGTCGGCCGGAAAGCGACTGAAGGAAAACTGGCAGACCGGCTGGTATGACTGCAGGTCAGCAAGT 10211 28 100.0 33 ............................ GCCCTGAGGCGGGCCTTCTTGATGACGAGGTGG 10150 28 100.0 93 ............................ GCAGGCGGGCGCCCGCCGCCTCCGCGCCGCCGTGTCGGCCCCGCGAGCGCGGGATCCTCCGGCCGCCAGGCGCGCGGAGAGGACCACGGCTGC 10029 28 100.0 34 ............................ TGCCTGGGTGTGCGATTTGGGCGGTTCGTCTGGG 9967 28 85.7 0 TCG.C....................... | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 5 28 93.6 94 GTCGGCCCCGCGAGCGCGGGGATCCTCC # Left flank : GACGCAGACCCAGTTCGCCGAGGATTCCGGGGGCAAGGGCTGGCACCGCATCACCGGGTCCATCCGGGGCAAGGTCCGCACCACCGCGAAGAACGACTCGACGTTCGGGCTGACCTGCAACAAGCGCCCGAAGAAGCAGCACCCTTACCGGCTGGAGGCGCGCGGATACGCCACGGCCGACGACGGGACCAAGGTCAAGGGGTACCTGGAGTACGGTAAGGACTCCAAGTGGAAGTGCCGCTGACAGGAGACCCGCCCATGAGCGGCTTCGGATACACCCCAGCCGACCCCGCCACGGGAGAGCCCGCCCGGTTCAACGGATGCATCCCCCTGCCGGGCAACGTCGAGCTCGTAGACGACATGAGCGACATTGCCCTCAAGGACCGCATGCACGGTTTCCTCTTCGACGACGAGGACGGCGCGCCGCAGGCGGCCTGAACCCAGCCGCAGGCCCGTGACCGGTAATCGGCTCGGGCTGCGCGACCCCACGGGTCCTCTCC # Right flank : GCAGACTGATATCAGAGGGCGGAATGAGAGTACATGGGAGTTTTGTCGTCGCCTGAGCGTGTGGCGGTGGGGCATCCCGGCCGTTCGGTGGTCATTGGCATGTTGGGCTGGCCGCCGTGAGCGAGCGCGAGCCCTACAAGACCGACGTGAGCGACGAGCAGTGGGCGCTGGTCGAGCCGGTGATCACCGCGTGGAAGGCCGCGCATCCCTCGGTCAGCGGCCATCAGGGCCGATACGCGATGCGGGAGATCGTCAACGCACTGCTCTACCGGGGCCGGACCGGTTGCCAGTGGGACCTGCTCCCGCACGACTTTCCGCCGCCCGGCGCGGTGAAGTACTACTTCTACACCTGGCGTGACGACGGCATCGATCAGACCATTCACGACCTGCTGCGCTGGCAGGTGCGGGAAATAGCGCGTCGGAAGGCGGACCCGAGCCTGGTGGTGCTCGATACCCAGAGCGTGCACGCGGCGGCTGGAGTGCACGCGCAGACGACGGGG # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGAGCGCGGGGATCCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGAGCGCGGGGATCCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28110-27898 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01000015.1 Streptomyces sp. SA3_actF contig01218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28109 29 100.0 32 ............................. ATGGCCGCCGCTTTCGACCGTCACTTCGTCCA 28048 29 100.0 33 ............................. CCAGTCACACCCCACCCGAAGAGCAGCCAGCAG 27986 29 96.6 31 .............A............... CGCTACGTCCGCGACGCCTCCCGAGCGTCGG 27926 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 32 GTCCGCTCCGTACGCACGGAGGTGAGCCG # Left flank : TCCGGGGAGGATTGCGTCCGGCGGAAGTTTG # Right flank : AGGTCAAGCCGGCCGCGCCGCATCGCGTCCATGAGGGCTGCGGCAGCTTCGCCGGTGTTGGGCATCTGCGGCTCCTCGGTTCACGGGTTCTGGGTGGCGGTGCGTTCCGTCACTCTTCTGGTCCGGCCAGCTCCACCTCGTCCTGTCGTAGTTCGCGGGCCATCCGGGTTTCGGCGAGCGTCGCGTAGTGCTCGGACAGTTCGATGCCGACGAAGCCGCGTCCTTCGCGCAGGGCGGCGACGCCGGTCGTGCCGCTGCCGGTGAAGGGGTCGAGGACGACGCCGTCTTCGGGGCAGGCGCGGACGAGGGTGCGCATGACGTCGATGGGCTTCTGGGTGATGTGGATGCGGTCCTTGCGGGGCTGGGAGGCGGTGTAGTCGCCGGGGAGGTAGAGGTCGCGGGTGGTGTCGAGGCTGCCTTTGACGCCCCAGACGATGAACTCGCTGGACTGCTTGAAGCCGCCGCGCCTCGGGCGGCTGGCCGGCTTGATCCACGGCATC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGTACGCACGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGTACGCACGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27858-28071 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01000016.1 Streptomyces sp. SA3_actF contig00190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 27858 30 100.0 31 .............................. CATCCTCAGCCTCAAGCCCACCGACGCGCCG 27919 30 100.0 32 .............................. CGCCGTACGGCCTGACGGTGTTGGACCGTGAC 27981 30 90.0 31 TC...........................C TGACCCTCACCGGCGCGACCCGCGCGGGCGG 28042 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 4 30 97.5 32 CTGCTCCCCGCGCGTGCGGGGATGGCCCCG # Left flank : GCCATGGAGGGGGCCGATCCGGCGCGAGCCGCGCTGCTCGCCGTGTGGCACGACTCGCAGGAGTCGCGGACCGGCGACGTGAACTACCTCGGCCGGAAGTACGCGGACCGGGCCGACCCGGAGGCCGTCACGGCGGACCAAGTGGCGGGGCTGCCGGAAGCGGTGGCCGAGAGCGTGCGGGGTGTGGTCGCGGAGTTCGAAGGGCAGGGATCGGCAGAGGCTGTGTGCGCCAGGGATGCCGACAAGCTGGAGTGCCTCGTGCAGGGCGTCGAGTACCGGGCGCGGGGCTACGCGGACGCGCAACGCTGGATCGACAACTCGTACGGGCGCCTCACGACGGCCTCGGGGCGAGCGCTCGCCGACGCGGTGCTGCGGACGGGGTCGCTGGACTGGTTGCGGGAGGCGGTGGGGGAGGGGTGAGGGAAAAGTCGTAATTGCCGGAGTCAGCGCTTCTTGCGGAAACCCCACCGGGCGATAGCCAAACTCGCTGGTCAACGAGA # Right flank : CCACGCCGACGAGGGCCTGAAT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGCCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-321 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01000006.1 Streptomyces sp. SA3_actF contig00228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 33 ............................ CGCCCCGTCCGCGTCCAGCTTCGGCGCCCAGGC 110 28 100.0 33 ............................ CGGCTGGCACCCCCACATTCACGCGATCGTGTT 171 28 100.0 33 ............................ CGTGTGGGCGGGAGCCCTTGTCCCCCACGGCGA 232 28 100.0 33 ............................ CGAGGCGACCTGGTGCAGCTCACGCACGCCGTC 293 28 85.7 0 .........C...C......A...C... | T [295] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : GTGCGGGGATGAGCCCTTCACGGACTACATGAGCATCCTGGCCGGGCTC # Right flank : CCGTCATCACCGTGACCGCGAGCGCGGACCGTCTGTTCCCCTGAAGATGGTCCCCCCGCCGTTGCCAACCTTGGCGCGGGGCCTTGGCCGGCTCTGCTCGGCGGTCCGTGAGGCCCTCTGTGGCAGGCCAACAGTACGCCGTCTCGTCTCTGAGAAGCCCGGACAACAAGGTCCCAGGCCATCGAACTGGGGCTTTCGCATGGACCGGGCGACGAGACTCGAACTCGCCCTCTGGACATGGAATCACCCGGCGCCGGCTGTCCCGCGCTCCTGAGCTGCGCCGACGAGCCGCCACGTCCGCTCAAACGGCTGTGGGCGACGCCGTTGATGTCCGCTGTTCGCTGCCCCTACTGACAGTTGTTGTACGCCGCCCCGGCAGTGCGCGCGAGGAGGAGGCTGTCTTGGCGCGGTCGCTATCCGACGGCCGAATGCGTTCAGCCCGTCAGGTGAAGGCTAGACCGCGAAATGCGTTGCGGACGTCAGCCAGCGGCTGCCGGTCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 241-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01001062.1 Streptomyces sp. SA3_actF contig01293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 240 29 100.0 32 ............................. ATCGGCGTCGCCGTCCTCAACCCGACAGGGGT 179 29 100.0 32 ............................. GGCCTGCCCTCGCGGATCACGTTCACGGTGTA 118 29 89.7 27 .......................C.A.T. GTGCGCCGACCAGGTCCTGCACCATGG 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 31 CGGGCAACCTCCGCGCGAGCGGAGCGGAC # Left flank : TCGTCCGCCCAACCGATGATGTGCCTCTCTCCCCCCGCCCGTCGCGAGCTTGGCGCGCCACAGGCGCCGCGTCTGAGCAGGCGTGGGCCGCAGCCGTCGTGGGGCCGTTCGACCTCCCTCAGGCTCATACCACGCATGTTTCTCTCCGTTCCCGCACGGCCGGGTACGGAGAATCGGCGGCACGACCTCGATGAGCGACCCGGCTCACCCGAGGAAGCTCAGCCGCACCTGGCGGTCCGGGTTGTCCACGTTCGTGTCCACCAAACTCCGTTAAGGCAATTCTCAGGATACGCACCGCGCGGCGCCCTGGGGATGTCGGATCCGCACGCTCTGGCCAACATCCCGTCGACGCTCCGGGAAGGCCGGCCCAGCTGATGTCGTTCTCAAGCTCAATGCACGGCGCGCTCGTTGACCCCACGTCCTGATTCCCCGAAACGATGCCCTCGCCTTCGCGGGCGCGGAGCGGACGGCACCACGACCGAAGTCGCGGGGGTGTTTCC # Right flank : CGACCGTTGCGACCACTGCGGCAGGCGGCGCATC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGCAACCTCCGCGCGAGCGGAGCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.80,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 2105-1832 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01000729.1 Streptomyces sp. SA3_actF contig01138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2104 29 100.0 32 ............................. CTGTCAAAGGTCCGCTCGCACAAGCACACCGT 2043 29 100.0 32 ............................. GAACGTAGCGCCGAACTTCGTCGTTCCATTCG 1982 29 100.0 32 ............................. GACTACACGGCCCTTTTCGCAGAGGAGTGCAG 1921 29 96.6 32 ................T............ CTCATCTACGCGGCGGGCACCACGGTGCTCCC 1860 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 ATGGTCCCCGCCCGCGCGGGGATGGCCCC # Left flank : GGCGGCGTGTTGAGGGCGCGGCGGATCGCGGGCACCGTCGGGTGCTCGGTCCCCGCCGCCGTGGCGAGGTCGAGGGAAGGGCCGACGAGGTCGGCCACGTTGTCGAGGCCCAGCTCGCGCGCGAGCGCGGTGAGCATGGTCAGGGAGTCGATCGAGATGACACCCCGCTCGACTTTGCTGAGCCAGTCCTCGGAGCGGCCGACGAGCCCGGCGACGGCAGCTTGTGTTTTCCCGGTGCGGGAGCGGTAGTACCTGATCCGCTCCCCGGTGGTCATGCTGACGGGATTGATCATGGCGGTCCCCTTGATGGGTGAGAGCACTCAGTCCCAGAGTACGGCTGACGGGGTGCCACAAGGCGGGCATACTGGAGAGCGCCCCCGCCGGGAGCACTCATTGGCCCTCGTCGTCTCATCGCGACGAGGGCCGCCCCAGTGGTCGGGGCATCTGCTGAAGTTGCTGAAATCTGGGTGCCCGGACAGTAGCCTTCCAGGTCACGAAGT # Right flank : TGGTCCCTGACACGACGAAGCGCCCCCTCCCCGCGCGTGGCGGGGAGGGGGCGGGTCAGCCGCGGATCAAGTCCGCGTCGTCGGGGTCGGGCTCCGGGACGGCGGTTCCGGTGCTGCGGAGCGCGGCCTGGAGGCGGAGCACGTACCGGCGCAGCGCGCCGATGGTGCGGTCCTTGACGGCTCGGCTCAAGCTGGCGCCCCGTTCTCCCGTGCCCGTGCTCGATCGGCTCCTCGTCGCCCACGCTGCGAAAATCTCCCAGAATTCTCTCCCAAGGCACGTCTCGGGCACCTGATCAGTCAGGCAAATATGCGCCCTGAGCTGGCACTTTGGAAGTAGCCGAGGAGCGATGTACTACAACGGCTACGTCTACTCGAACGACATCGAGAAGGGCTTCGACGTCCTCAAGATCGACGACCGCAGGACCGATCCCGCCAAGCGGGTCAAGGTCGGCGAACTGAACGTCCAGACCCAGCCGGACTACTTCGACTGAACCCCCGGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCCCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-244 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01000589.1 Streptomyces sp. SA3_actF contig01429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 32 30 100.0 31 .............................. GAGTGTCTGCACGTGCAGACAACCTTGCGAT 93 30 93.3 31 ........G....................C AGGTACGGCGCGGCCGTCAGTGGTACCCCAC 154 30 90.0 31 .........A...............C...T CGGCGAGCCCGCGCGGCCCGCGCTCGCCGCG 215 30 83.3 0 ...........AT.C...........T..A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 91.7 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : GTGCGTCCGCCCGAGCCCGCAACGGCATCGGC # Right flank : ACTGCGGCACGGCGCCGCAGGGCGGGTCTACGCCGATCCGGGCCGTTTCAGCAGCAGTTCGTCCCCTGCGCGGAAGCGCTCGATGCCACCCTCCTCCCACGTCACCACCACGAACAGGCCACCCATCGCTCCGATGTCTGTCTTCGCCGTCTTCACCGTGCGCCACCGCCCCTCGTAGCCGATCCGGTCTCCCGGGCCGATGAGAGCGGCCACCCTGGTCGGCGTCACCGCTCCGGCTCCTCGACCCGCACGATCCGCTCCAGTGGTACGTCCCACTCGATGCCGCCGCCCGGCGGGCGCAGGAACGCCTGGCTGGCGACCAACCGGTTCTCCCTCTTGGTGCGCTCCTCCAGGACCCAGGTCAGGTATCCCGTGCGCTCCGAGATCTTGTCCCTCACCAGCGTGCCGGCCGGGTACGGCAGCGGTCCTTCGCACAGCATCGTTTCCCCGTTGCCGCTCACTCCCGACCGCCCTTGCGCAGAGCGTCGGCCAGCCGCGCA # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4842-5115 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXB01000508.1 Streptomyces sp. SA3_actF contig00277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4842 30 96.7 31 .............................A CGGCAGAGAACCGCTGCCTCGACTTCGTCAT 4903 30 96.7 31 .............................G TGCGCACGCTCTTGGTGATCTGTGTGCGGAA 4964 30 100.0 31 .............................. AGCGTCGGACGCGCCGACTCCGCGACCCGGT 5025 30 96.7 31 .............................T CGACGCCGCCTGAGCCTGCACATCAATCACT C [5029] 5087 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== =============================== ================== 5 30 97.4 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Left flank : ACGGTACGGGGGGCGCGGACGGGGCTCTGCGAGGCGCGCGGCGGGGCCCACCGACCCCCCGTACCCCGGCCCCTGCCCCACCGTGCCCCCGAGGATGCCCACCGAGCGCCCCCTGTGCCGGGATTCCGGGGCGGGGGAGGGGGGAGTGGCGCGGTGGCGGTGGCGGTGGGGATCACCGTACGGGGAATGCGGGGGCGCGTCGTGGGGCCGAGGGTTCCGGCGCCTCGGGGTGCGATCCGCTGCGTGGCGCGCGTCGTGGGGCCGAGGGTATCGGCGCCCCGGGGTGCGATCCGCTGCGTGGCGGCCCCGGGGGCGAGCCGGCTGCGGGCGGGGTGGCCGTGTGGGGGCGGGCGTGGATGGGCGTGGTCACGCGGGGGCGGGCGTTAGGCTGCGGAAGGTCCGAAGAGCTCGGGCGCCGAACCGTCTTGTCCGAAAAGCCGGACTCTCCACTTCTTGCTGAATCGACGCCATCTCGAAGCCAAAAGGGCTGCTCACGCAGA # Right flank : | # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //