Array 1 309-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000191.1 Thermus scotoductus strain 32_S32 NODE_272_length_1126_cov_79.9229_ID_543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 308 29 100.0 30 ............................. CAGGGCGTGGGCATCGCCCTCGGGGTGGCC 249 29 100.0 32 ............................. CGTAAATGGGCGGTAGGCAGACCTTCCGCCTC 188 29 100.0 32 ............................. TGGGTCTATGGCCGCACCCGACAGGAAGTGGC 127 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCTTGAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGATTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GATGGCGGAAGGCCTCTTACGGATCTGGCAGGCGTAGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 357-1913 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000136.1 Thermus scotoductus strain 32_S32 NODE_222_length_2051_cov_52.764_ID_443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 357 29 100.0 33 ............................. CGAACCCAGTACTCTCGGTCATAAAAACACAGC 419 29 100.0 33 ............................. TGATGGGGATCAGCCGGAGACGACCGGGCTGCC 481 29 100.0 32 ............................. CCCCTCAATCAGCGCAGTCATGCGTCCTCCCT 542 29 100.0 33 ............................. GCCTGTTTCGCCAGAGCTAGCGGGTCCACACGC 604 29 100.0 32 ............................. TATGCGGAGGATGACACCAACGGCCACCCCCA 665 29 96.6 32 ............................T GACCCGGCCAGCGTCCCGGCGGGCGTACATCA 726 29 100.0 32 ............................. CATTCCCGCCCTACCTGCACGCAGACGCCCAG 787 29 100.0 32 ............................. GGCGTCCACGAGGAGGAAGGGATGAAGACTCT 848 29 100.0 32 ............................. GTTAGAGAACAAGCCCACGATGGCCTGGGCGG 909 29 100.0 32 ............................. GCCCATGCCCTTGACTTTCCGCATTCCTCCGC 970 29 96.6 32 ............................T GTGCCCGGTGGGCTGATGGGGCTGATGGGGCT 1031 29 100.0 31 ............................. TAGCAATGGGCGTCATCCAGGACATATCCAC 1091 29 100.0 32 ............................. AGAGAGCGAGCCTCAGGGCTGGAATGGACACG 1152 29 100.0 31 ............................. AAAGCGGCCTTCCCCCTCTTCCCGGAACCGA 1212 29 100.0 32 ............................. CCCCTCCGGCACGCTAGTCCCCCTGACTTTAG 1273 29 100.0 33 ............................. AGGGCCACGCCCAAACACGAACCCGGACCACTC 1335 29 100.0 32 ............................. GTTCTCCGCCGCATCCAGGACCCACTGAATGA 1396 29 96.6 32 ............................T CCCGGGCTAGCTGGCCAAACGCATCAAGGAGG 1457 29 100.0 32 ............................. ACGTCATCCCACGAGTCTATTCGCCGCCACCC 1518 29 100.0 32 ............................. AGTCCGGTGGGGGTGGCGGTCCTGTCATTGAC 1579 29 100.0 32 ............................. AACACCCAGCAATCTATGGCCTGGAAGACGTC 1640 29 100.0 32 ............................. ACCTGATTAGGGTCAGTATAGGCCAGTGTTCC 1701 29 100.0 32 ............................. AGACTATTTTCAATGGCCGCCTCGTGCGGGAT 1762 29 100.0 32 ............................. AGACGGCCCTTATCCACCACCTCAATCCGCCG 1823 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 1885 29 89.7 0 ..............C........A...T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : ATGAGGGCCAGGAGGCCCCAAAGGGGGTACTGCCGGTTGCGGGCCCGGGGGTCGGGGATCTGGGACAGGGCTTCGCGCAGGGTCATGCCCCCTCTTTACTCCAGGAGCCGCATATAGGTCAAGTCTGCTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGTG # Right flank : AGAATGTACAACCCACATTCCGCACCCCCTTCACTCCAGCAGGTAATATCGCCCGGCCCCCAGAAGGCGCACCGCGGTCTCGTGATGGGGAGCCAGGTTGAGGACGAGCAACTTGCCCCCCAGCTCCACCAGGCGGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 395-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000305.1 Thermus scotoductus strain 32_S32 NODE_383_length_394_cov_92.7753_ID_765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 394 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 333 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 272 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 212 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 151 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 90 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : | # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1473-835 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000372.1 Thermus scotoductus strain 32_S32 NODE_68_length_11582_cov_58.565_ID_135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1472 29 100.0 32 ............................. TCTTTGCGGCTTTCTGGTGGGGGGTTGCGGCT 1411 29 100.0 31 ............................. GAGGCAAAACCGGTTGAGAGGAGGGGGGCAC 1351 29 100.0 32 ............................. CTCCTGAGCCTAAGCCAGAGGAGAACCCGGAT 1290 29 100.0 32 ............................. CTGACCGATGACCCGATGGTGGATTACATCGG 1229 29 100.0 32 ............................. AACCCCCAACAGCTAGCCACCGAACCCTCGGT 1168 29 100.0 32 ............................. CTGGTCAAACAGTCTTCGTTTGGGCGCTATGT 1107 29 100.0 32 ............................. AGCTGGACTGGCTGATAGCCCTGCTTGAGGCC 1046 29 100.0 32 ............................. CGGCGTTGGGAGAGGAGGGTGTCCACCGGCCC 985 29 100.0 32 ............................. CTGAACGATCTGTTGGCAAAGGGGTCCAGTGC 924 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 863 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAACATGTACCTGGCACCCTATGCTTGGCTAACCAGAACCGGTTTCGGAATGTTGAGGGAGATCCCGGAGCACCTATTGGCCCTGGGGGTGGACCCGGTCACCGACAGGAAGCACTCCTGGGATGGACCCGAGATGGAGGCGGTGCCGGGCCACCCCCGGGTCCTGCGCCCCCTCAACTACAGCCCGGCCACCCCTAGGAAGGGCTTCGCGGTTTTAGAACAAGTTGGGAACCCATACCCATGTCCCCACCCTGGACACCCGGGTGCTGCCCAAAGGTACAGCCTACGTCTCCGACGTGGGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 910-1165 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000344.1 Thermus scotoductus strain 32_S32 NODE_42_length_15548_cov_63.0973_ID_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 910 36 100.0 37 .................................... TCCAAGAGCCACTCCAGGTTGAGGCGCTTGAGGAACT 983 36 100.0 40 .................................... AAGTGTACGTAGTCGACCTTCTTCACCGACTCCTTCACCT 1059 36 100.0 35 .................................... CTTCCAGACTAGGGCCGGGCACTCCACGCCATCAG 1130 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CCAGCGAAGGCCCTAAATACCCAGGATGTCTTGGAACCTGCGCAGCGGACTTCGGGGGGCAAAACCCCTCCCCGAAGTCCGAGGCCTAGCCCCCCAAAGCCGGAGACCTACCACCGGACCCATACAACCGGCGGGCCGGGGATCATACTATACACAGCTGCATTTTTGTGCCGCAAAGGAAACTACTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCCGGGTTTGGCAATATGGACGGGTCCTGGCAAACAGTATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGTGTGGTCATCCGGACGACCCAGGGGGGATCCGTGGATTACGTCCCGTTCCCCGCCCTGGGGGAGGCCAGGGGATGGGCCAGAAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCCGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCCCATCCTGTTCCGCTATGCGGAGTACCTGAAGGAGCTCATGGGCCCGGACGCCTCCTCCGACGAACCACGCGCGCGAACTAGGGAGGCTCCTCCCTAGCCCTCGAGGCCAGTACCCTTCTTAGCTACACATCGCGCTACTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 5184-5596 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000344.1 Thermus scotoductus strain 32_S32 NODE_42_length_15548_cov_63.0973_ID_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5184 36 100.0 37 .................................... CCCAGGGCCACGGCCATTGCTGTAAGCCCTACCACTA 5257 36 100.0 37 .................................... TCGTCGTACTCCTTGTACATCCACTCCTCGTAGCTAA 5330 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 5407 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 5484 36 100.0 41 .................................... TACCCTCGCACTGAGGGCATTCCTCGTACAGCTCAGCCGGG 5561 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATAGTCAAGAGGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 38-983 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000039.1 Thermus scotoductus strain 32_S32 NODE_135_length_5627_cov_60.42_ID_269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 99 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 160 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 221 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 281 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 342 29 100.0 32 ............................. CCCCCGTTGTTGATGAGGGCGGGCCTAGGGAA 403 29 100.0 33 ............................. GCGCGCCTAGCCGTTTGCCACCGGATCGGGACC 465 29 100.0 32 ............................. TTCCTCCACGATTTCCCCCAGGGGGCGGAGGC 526 29 100.0 33 ............................. GATGTAGTCCCTGGCGTCCTGCACGATGGCCGC 588 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 649 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 710 29 100.0 32 ............................. GAGCGCGGGATGTCCAGGGGGGAGCTTGCAAA 771 29 100.0 33 ............................. GCCCTCATAAAGGGGAAGTCGGCCCAAACGCCG 833 29 100.0 32 ............................. CTCCTGCTTGGGCCGGGGCCCCAGCCGAAGCG 894 29 100.0 32 ............................. GTGTCATAGAGGCTAGCCACAGAGGAATCAAA 955 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : GCCCGAGGCCGCGGAGCGCCGCGTAGAGAAGAAAACCG # Right flank : GCCTATCCATACGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGCTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGGGGAACCAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2063-1583 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELR01000098.1 Thermus scotoductus strain 32_S32 NODE_189_length_3090_cov_277.648_ID_377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2062 36 100.0 35 .................................... GAGGCGTTTAGGGGGGAGGCTAAGCGGTATGAGAG 1991 36 100.0 38 .................................... CTACTATGTGGTGGGCAACACGGAGGAGCCAACGATGG 1917 36 100.0 42 .................................... TCTGACTTTTTCGTCCTTGAGGGCCTCGCTATAGGCCGTGTT 1839 36 100.0 43 .................................... TTGGACCCTTTCCCCACCTTCGCCTCGATCTCCTCGTAAATGG 1760 36 100.0 31 .................................... CGTGGGGGCGGCCCTACCTCTTCACCCTCCT 1693 36 100.0 39 .................................... AGCACTAGCTAAGATGGCAAAGAACTTGTTTGGTATTAA 1618 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 99.6 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : AGTTTCCCAAGGGAGAGGCGGTGTACAAGCTTTTGTACCTGGAGTCTGAGCGGCAGGAAGGGAGGTGGGCGGAGCGGAGGTTGAAGGGTGTTGCCGAGGTGCAGGAGGTGTTGGAAGGGATGCTTCGGGAAAGGTATGCCCCCCGTACACAGACGCTTACACATAAATCTTGACACGACCGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCAGGCTGGAAGCCTGGGTGGCTTGTCTTTTTGGCTCTGCCAAGCTTTGTTCGCCGCCTGCTCTCCCGTCCCTGGCAAATGGGAACTAAACGGGCTTTCTCGGTCGCCAGGGCAGTAGGTGGTGGTGACCTCCCTCCACCTTTATGAGCCGAATCCCCTCTAACGGTGGCGCAGGGTCTTGGCGGAAGGGGCATGGGAGCGGGGTCTCCTGCCGGTGTTCGGATTTCACAGGTTGCCGCCGGTTCCCTGTTATCCTCCATAACCAGGTGGTGGGCAATGTGGAGAACAACCCGCGACCCCGACGCCCTTAGGGCTAGTTTTATCGCCCTTCGGGAGGCGGTTAGGCGAAAGGCCCTGGCCCTCGAGGCGCGGTATGAGAGGAAAAGGCGCCCCCTGGAGCGGGCCCGCCAGGAGTTCTTGCAGCTGCTCGAACACCTTCGGCAGCAAGGGGCAGAAGGCCGTTACCCAGCCTCCTTGCTCAAGCCCGCCCTCATGCGGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //