Array 1 266596-264231 **** Predicted by CRISPRDetect 2.4 *** >NZ_QELV01000007.1 Listeria monocytogenes strain N16-0716 N16_0716_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 266595 29 100.0 37 ............................. AAGTACAAGCATAGATTTGCGAATTCGATTGAGCGTC 266529 29 100.0 38 ............................. CAAATTGAAGATATAAACTACATTCAGACAGTCAGAGC 266462 29 100.0 35 ............................. ACGATTACTACTACACCTGCCAATGCTAGTCAAGC 266398 29 100.0 36 ............................. GAGTTCATTGTTTAAAATGATATATTTATCGCCTAC 266333 29 100.0 34 ............................. CGGCTATCTTCCGCGTATTTGCGTATGGAATCAT 266270 29 100.0 38 ............................. AGGTAAATCGATTATGTACGTCGAAGAAACGGAGCACC 266203 29 100.0 35 ............................. AAAGATAGCGCCTTTACTTTATTTAAAACAGCTTG 266139 29 100.0 36 ............................. AATGTTGAAAGTTTCTTCATTATCCGCAATATTATT 266074 29 100.0 37 ............................. TGATTAAAATTTCACTAGGTTTGTCCTTAGGTCTAAA 266008 29 100.0 35 ............................. ATCACAGGTAACATTGCAGTAGCTAAAGCTCCCAT 265944 29 100.0 34 ............................. AACACTTAAGCCGAAATTTATTTTAGTTTCATCT 265881 29 100.0 35 ............................. CTAGTTTCAACACTAACTTTTGCGTTTCTGGCGAC 265817 29 100.0 37 ............................. TCTTTATTCACTTTCACAAAAGCTTTGCCTGCAGCGC 265751 29 96.6 36 ................T............ TGTTGTATTTTTGCTGAAGTTCTTCATATGCATTGA 265686 29 100.0 37 ............................. GCGTCCAGTAGGTATGCATAACGGTTGTTTTTCCACC 265620 29 100.0 34 ............................. AATTGAGTGTTGAGCTCACCCACAGCATCACCAA 265557 29 100.0 35 ............................. AAAATATCTCGTAACACGTCTACTTTTACATGACC 265493 29 100.0 35 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCT 265429 29 100.0 36 ............................. ATTGTATATATATTTCCATATTTTGTAGCCCAAATT 265364 29 100.0 37 ............................. TTGCTTAATTTTAGGCTTAGGTGTGGCGGTGTCATAG 265298 29 100.0 37 ............................. TTCTTTTATCCCAACCTATAGACGTATAAGTATCTAT 265232 29 100.0 34 ............................. AAATTCCTCCATCTGTTACTTTATAGATTTCATG 265169 29 100.0 34 ............................. AATGCTACGGATGCTGAACCTAGTGCTACTTTTA 265106 29 100.0 34 ............................. ATGTACCTCGCCTTTTTTGTCTTCATAGCGCCAC 265043 29 100.0 36 ............................. ACCGTTTTGGCGCGCCGCAGTGATAAAAGAAGTGGC 264978 29 100.0 34 ............................. ATAGCTTATCAATCCGTTGGACAGATGAACCTTT 264915 29 96.6 35 ..................A.......... TTCGTTAGCATTAACGCTGAAAATCAACTTCATGT 264851 29 96.6 37 ................T............ TTTGTTCGATTTCGCTAATTTGGTAGTTTGTGACTTC 264785 29 100.0 37 ............................. GTGGTTGGCAAGAAACCTTTTTTGACAGGTAATTTTT 264719 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 264653 29 100.0 38 ............................. GTGGTAACAGTGTTCTTATTTCCTGGCGGAGCGCTTCC 264586 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 264523 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 264457 29 100.0 37 ............................. TTTTCATCGCTGTTTTAGTGTCATATCCTAGTCCTTT 264391 29 96.6 37 ...................T......... ACTTTCTTCACGAGTTATATGTATAATTTCATCCACC 264325 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACC 264260 29 93.1 0 .......................C....C | A [264235] ========== ====== ====== ====== ============================= ====================================== ================== 37 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGGAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //