Array 1 22563-23237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMO010000006.1 Listeria monocytogenes strain 2013L-5443 NODE_1_length_1201712_cov_31.1963_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 22563 29 100.0 38 ............................. GTGTTATCAAAGTCAAAAATAACTTCTGTTTTACCTGC 22630 29 100.0 35 ............................. TAAAAAAGTAAATGCTAATGATGAAGATTATAAGG 22694 29 100.0 34 ............................. TCTATTTTTAAATTTGAAGTGACGGGTGCATGAG 22757 29 96.6 37 ..............A.............. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 22823 29 96.6 36 ..................A.......... AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 22888 29 96.6 36 ..................A.......... TTTAACGTTGGCCCAACATTTTTATCTGAGAAGGGG 22953 29 96.6 35 ..................A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 23017 29 89.7 36 A.............AC............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 23082 29 96.6 34 ..........A.................. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 23145 29 96.6 35 ..............A.............. GGAATCCTGGACAGTCAGGCGAAGATAACTACACT 23209 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 95.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACTGGGAATCGACAGAAAGTTGTAAGTGGTTGTAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAGCCCCACCACCATCCATCAAACAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCTCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTGTTTTTCAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTAAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 38821-39761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMO010000006.1 Listeria monocytogenes strain 2013L-5443 NODE_1_length_1201712_cov_31.1963_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 38821 29 96.6 36 .......................A..... GAAATTGTTCAAACAGAAACATTAAACGTTAAACAA 38886 29 100.0 37 ............................. TTTAAAACCAGCGACAAGTAAGGTTATAGCTGCTACA 38952 29 100.0 35 ............................. TTAGCAATATGAATACTAACAGCGTCTACCGTCGC 39016 29 100.0 35 ............................. TTTAAATATTCTCTTTGCATCTTTGTTCCTCCTCC 39080 29 100.0 36 ............................. GATTTTTCTAGCTCATCGCCAGATTTTTCTATTTTT 39145 29 100.0 36 ............................. ACTTGTGCTTCAAATGTTGCTTTAATACCAGTTGCG 39210 29 100.0 38 ............................. GTGTTTTTGCACGATAAGCCACTCTATAATGACTTATC 39277 29 100.0 36 ............................. TCGATTTGTTGTTGTATTTTTTCTTCTCCTCGAGAT 39342 29 100.0 35 ............................. GTTGATTGCCCGGTTGAACCAACAAACCCGATAAT 39406 29 100.0 38 ............................. TTTCTTATGGCGCTTCCATTTTTGCACACCATGTTCGG 39473 29 100.0 36 ............................. TTAGGCATTTCTGTTTATGCTAACGCATTAGACACA 39538 29 100.0 36 ............................. GAAAAAAGTACGGGTTTATTTACGGCAACTGATGAT 39603 29 100.0 35 ............................. AACGGTAAAAAAGATGCAAAAGGTCGTATACCTGT 39667 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACG 39732 29 86.2 0 ...............C..A....A....C | C [39755] ========== ====== ====== ====== ============================= ====================================== ================== 15 29 98.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGCGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAATACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAATTCCAGCGCTTTTAGTTAAGTAAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGTCAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAATCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTTGCTCCGCCAAACAGCGCCGCCACTACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCACCTGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCATGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //