Array 1 17057-14714 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPPS01000028.1 Streptococcus thermophilus strain DSM 20617 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17056 36 100.0 30 .................................... ATATACGGACTCATCTAGTGAAACTGGGTA 16990 36 100.0 30 .................................... GAATCTGTTAAAACATTGATTTTTTATATT 16924 36 100.0 30 .................................... TGTGCCAGCGTCATTCAAAGCAATTGCTGA 16858 36 100.0 30 .................................... CAAAGCTATCGAATATATCGCAGAGGCAAG 16792 36 100.0 30 .................................... TCTTTGTGATATAAATGAAAAAAAAGACTA 16726 36 100.0 30 .................................... CAAGCGTAAGTTTTACCGTTAGAACGTTCA 16660 36 100.0 29 .................................... GATAGCGCCTTTGAATATTAATGGTGTTC 16595 36 100.0 30 .................................... TAGACTTTACTAATTCTCAAGTAAATATAT 16529 36 100.0 30 .................................... TTCTTTCAGGTATGAAATTAGAAACACTTG 16463 36 100.0 30 .................................... TTTCACAGTCAACACATCTCCGACACGCTT 16397 36 100.0 30 .................................... ATGAGTTGGTAGATGTTAAAGCATCAACTG 16331 36 100.0 30 .................................... GTATATACAGAACTTGGAGTTTTAACGCCT 16265 36 100.0 30 .................................... CATACACCACCAGCAAAGTCTTTACCAATG 16199 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 16133 36 100.0 29 .................................... AGACCATGAAGGAAGGCGTTGACAAATTC 16068 36 100.0 30 .................................... AGAAATTCATGATAAGTGGTCTGAAACTTG 16002 36 100.0 30 .................................... AGTCAACTTACTATGTTAAAATAAGACAGG 15936 36 100.0 30 .................................... GACTTGAACCTGAATTAATCAAGGTAGCCA 15870 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 15804 36 100.0 31 .................................... CTTTCAAGATACTCATCAACCATTGATGTCA 15737 36 100.0 30 .................................... AAAAGGTGCGTATGAAACTCATCCCAGCGG 15671 36 100.0 30 .................................... CTATGTCTTTACTGTTCTTCCAAAACCACC 15605 36 100.0 30 .................................... TTTGTTTGCGTTCACTTAGTTTATACTGAG 15539 36 100.0 30 .................................... AATTTGTCATTGACATTTACCACCGTCCTG 15473 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 15408 36 100.0 30 .................................... CATGGCCTTGTATTTTCGAAAGAGCATAAG 15342 36 100.0 30 .................................... TATCCTCTCGTTGATAATATGCTTAATTCT 15276 36 100.0 30 .................................... TTGATAGACCAAAACACTTCTGTGAGCAGC 15210 36 100.0 30 .................................... TGCCTTTCTTCAAAGAAGCTATGCTTGTTA 15144 36 100.0 29 .................................... CTGCATCAAACGATGGCTTTGTCATCGGT 15079 36 100.0 30 .................................... AATATAATCGACGAGTAAGAGCGAGAGACG 15013 36 100.0 30 .................................... CGCGCACCGTTGACAAGTGTCAAGTTATCG 14947 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 14881 36 100.0 30 .................................... TCATACTAAAACTGGATAAACAATATTACA 14815 36 100.0 30 .................................... TGACACGGCTGGCAGTGTTTCGGTTGGTGG 14749 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGCCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 44714-46203 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPPS01000004.1 Streptococcus thermophilus strain DSM 20617 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 44714 36 100.0 30 .................................... AATACGTGAGTTTGGCACTCTTGACGTGGC 44780 36 100.0 30 .................................... CACAGTTGAGATACCGAATCCGAATAGCAT 44846 36 100.0 30 .................................... TTAATTCAACGATTTTACGAGCTTTCTTTT 44912 36 100.0 30 .................................... AGAAAGACTTCAACAGTCCAGAGAAAATAA 44978 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 45044 36 100.0 30 .................................... AACGACTGCACAGCGGCAGTATGGGTGAAT 45110 36 100.0 30 .................................... TGATGAAGTCAACATCACAGACACAGGGAA 45176 36 100.0 30 .................................... ACCTAACACACTTGTGTGTCCGTAGCTTCC 45242 36 100.0 30 .................................... GCCAAACAAAAACAGAAATGATGAAGCGGA 45308 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 45374 36 100.0 30 .................................... AAAATGGAATTCCTGTTGATATGGTTAACT 45440 36 100.0 30 .................................... CACTAGCAATGCCTTGCAAGGCTGCCCCAA 45506 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 45572 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 45638 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 45704 36 100.0 32 .................................... CTTAAGAGTTACCCTCTTAATGGTCTTAAGTA 45772 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 45838 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 45904 36 100.0 30 .................................... AACAGGTAGTAGATGGAATATTAAAGAAAT 45970 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 46036 36 100.0 30 .................................... ACGTTCTTCGCTAGTTCTTCTAGCATAAGC 46102 36 100.0 30 .................................... ACATCTGGAACGGTAGCACCAACGAATGGT 46168 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATTTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //