Array 1 85131-83007 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYU01000013.1 Clostridium roseum strain DSM 6424 CLROS_contig000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 85130 30 100.0 36 .............................. ATCACAAAATCTCTATTTTAAATATATAAGAAAACA 85064 30 100.0 36 .............................. AGATGATTCCAATAACTTGATAAGAATCTATATTTC 84998 30 100.0 37 .............................. CGCTCATTTAATCCCCAAAACTCGTCAAATTCATTAT 84931 30 100.0 36 .............................. CTAGCTTTTGAGTCTAATATATTTTTGTATATAGCT 84865 30 100.0 35 .............................. TTTATTAAGGAGGGTTATAGTTTTTGATATATATT 84800 30 100.0 34 .............................. CAATACTTTTGGTCTAATGGTATCATCACTTCAT 84736 30 100.0 36 .............................. TATAACCTACACCAATCCATTCTGTTTTGCTTCTGC 84670 30 100.0 34 .............................. AAGTTACTATTAACTATATATTTACTTAAATCAT 84606 30 100.0 34 .............................. TGCATCCCCTACAGCTTGTATCTATTGCTAACTC 84542 30 100.0 35 .............................. TTAGATATGTGATTTTCCATAAGTGCTATGCTTAA 84477 30 100.0 35 .............................. AATCAATTTTTCTATTTTTATGTGGTCCATTATTC 84412 30 100.0 36 .............................. CTACTTATTGACAATGAGCCTTTACAAATGCTATAC 84346 30 100.0 36 .............................. GATGTCTTTTACATGCTAATTTTGCGCTATCACCCG 84280 30 100.0 35 .............................. TGGTAAAGTTCTTCTAAGACACCATATCTTTCATT 84215 30 100.0 36 .............................. TTTGATAGGGCTATAAGCATGTCTCTTGATGCTTTA 84149 30 100.0 36 .............................. TAGCCTATTCTATCTTTAAATAGTTCACTTTTCATT 84083 30 100.0 37 .............................. TCATTTATATAAGCTACAGGTAACTTGTTGTATTCTT 84016 30 100.0 36 .............................. ATCTCCTTATCCTTCTCAAAGTTATTATTTCTCCAA 83950 30 100.0 36 .............................. ATATACTTCTAAAGCATTATTAAGATATTTAAATAA 83884 30 100.0 36 .............................. AAAGAAATTCGGAAGATATTGAAAAAATATCATAAT 83818 30 100.0 36 .............................. GGACTAATATGCATGTAGTAGAAAAAGATGGAGTGA 83752 30 100.0 37 .............................. GATACTTTTATTAAATTTTCCATTCTTCTTCCTCCTA 83685 30 100.0 34 .............................. TATAATGATTTATACATATAGCATGAAAAGGCTC 83621 30 100.0 35 .............................. TGGCAAGAGATTAATTATAAGGGGGTGACTTAATT 83556 30 100.0 34 .............................. TCATAATCATCACAAATTTGTGTTTCTTCTTCAC 83492 30 100.0 35 .............................. AAAACTCAACAGCGAATTTGAGTGCAAATATAAGA 83427 30 100.0 34 .............................. AATAGAACAAAGAGAGTGATATTATGAAATATTA 83363 30 100.0 36 .............................. CTATCTTTTTTTATTAAACCTATCTCTAACAACTGG 83297 30 100.0 36 .............................. TCAGCTTGTACTAATATATCTGCTATATCTTTTTCG 83231 30 100.0 34 .............................. AGTAATATAGTTGTACCATCTTTTGCTCTAATTA 83167 30 100.0 35 .............................. AAATTAAAATTAGTAGAGTAGGAGGCTGTTATGGA 83102 30 96.7 36 .......A...................... CCTTGTTTATCACACCCCCAACATCCAAATTTTTCG 83036 30 90.0 0 ....G..........A............T. | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.6 35 GTTGAACTTTAACATGAGATGTATTTAAAT # Left flank : GAAGAGTATAATGAAAATAAAGAATGGCTTAAAACCAGT # Right flank : AGTAAGTCAACATAAATTGTATTTTGTTGAACTGAGTTAATATATTATTTATCAGAGTTTATAATCTTTGATGATTTTTATTTCATATTAAAGTAAATATTGGTTATTACCTAAGTGCCATGTTATAATTAAATAATTATATACACAAGGAGGATACACATGAAAAAACGTTTGATAAAAGCTTATTGTATTGGTTTTTTAGTATTTATTATAGGTGCTCTTCTATCTGCTAATTTAGGACAATTATTTGATGGAGATTCATATGAAAATGCCCGTGCATTCATAATATCATTTGCAGTAATATTTTTGAGCAGTGTAGTTGCTATATCAACTTCCTTAATATTAGATGCAATTAAAGAAAATAAAAATTCTAAATAAAAGAATTACCAATATTATAAGATTCTAAACGTGTTGGTTCATAATTATCCACTGAATTCACTGAAATTGAAGTTCTAATAATTTGTAAACTCGGAAAAATCGAAATACTTATTTTTTTATGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 9160-7798 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYU01000124.1 Clostridium roseum strain DSM 6424 CLROS_contig000124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9159 32 100.0 35 ................................ AAGGAAGAAATTGCAGATATAGTTATCAGAACTTG 9092 32 100.0 34 ................................ CATTTAGTGAAGAATATAGAGAGACAAATAAGAC 9026 32 100.0 35 ................................ GTAATGCTATAGATGCTACTAGAAACATGGTTATA 8959 32 100.0 35 ................................ TTTATAGGTAATAACACATTCACCATTCCAGTGAT 8892 32 100.0 35 ................................ AAATGGTATGTTGCCAACTATGTTTGATATAGAAG 8825 32 100.0 34 ................................ AAATAAAGTTAAACAAAATCATAATTTTGTTGTT 8759 32 100.0 34 ................................ TCTAAATAATTATATAAAAACTAAGGTTATGTTA 8693 32 100.0 35 ................................ TGAATATAGAAAAACTGGTAGAAACTATATAATTA 8626 32 100.0 34 ................................ TTTTGTAAAAACATTAACAAATTAACAGATGATA 8560 32 100.0 35 ................................ AATAAAACAAATTGCTAAAAAGCTTAAAATAACAC 8493 32 100.0 35 ................................ TGTTTACTTAAAGTTATAGTCGATGTACGTATAAA 8426 32 100.0 34 ................................ ATAATAAAAGGCGAAGGATCTTTAAAGAAAGTTA 8360 32 100.0 34 ................................ CATTCAAAGTAAGGCTTTATTGGAAAAATATCCT 8294 32 100.0 35 ................................ ATATGGATAAGTTTAAAGCAAGATGAAATAAGTGA 8227 32 100.0 34 ................................ TGTTATTCAAATTGTACGACTGATTTTGATTTGC 8161 32 100.0 34 ................................ AATCTAGGGATTTAAATGGCTTTATGAAGAAGTG 8095 32 100.0 34 ................................ AAAAAAAGAATATGTATGTGATATAGACAAAGGA 8029 32 100.0 34 ................................ TATGAGGTGATGGATATGGTTTTAGAGTTATCTA 7963 32 100.0 36 ................................ ATCTTTTAAAATATCAAATTTAATGCCAATTTTAAT 7895 32 100.0 35 ................................ TTAGCAGCCATGTAAGCCTTAGAAAAATACTTTTG 7828 31 81.2 0 ...AT........T...A.T....-....... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.1 35 GTCGCATCCTATACGGGTGCGTGGATTGAAAT # Left flank : TAAAGAAGATTTGCAAAGGCTC # Right flank : GTATTATCAGGGAACTTTAGATTATATAGAAATTTTATTGATGATGCCTTTGGCGAGTTTAAGAGGTATATATTTAAGAGACTATTATTAAAAATAATATGGAGAAGGCGAAACATAGGAATTACTATATTCCCAAAATGGAGAACAAGTAATAATAAGGGATTTTAAAATAAATATATTATATGCTATAAAAGATTTCCTATTTAATATTACAAAAGCCATTGATGTAAAAGAGGAAAATAGAGAAAAAGTATATTAGAGCTTTATAGGGAGAAGAAGAAAAGAAAGTACAATGATTTTTTTGGTGCTAGATGATATTAATATTGTCTAGTGCTTTTTAGATGAAATATTTATTGTTATTAATAATTAGAATAAAGAGTATGTGTAAGTATAATTAATGCAGTATTTACATTAGATGTACTTAGTGTTATAATTTAGTAAATAAAAAATATTACGGTAAGGAGAATTTAGGTATATGAGCACTTATGAGATATTGCCAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1660-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYU01000110.1 Clostridium roseum strain DSM 6424 CLROS_contig000110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1659 32 100.0 35 ................................ CTATAGAAGTTAATTCGTTAGTCAACTCATTTTCA 1592 32 100.0 35 ................................ TCTTTTAAACCCTAAATACACACCAATAATTGCAA 1525 32 100.0 34 ................................ CAAGGTAGCCAATCCCAACTCTGGTCCACATAAA 1459 32 100.0 35 ................................ CTCCATCGGCTGCGGATACATCATCAAGTTTAAGA 1392 32 100.0 34 ................................ AGTAATGCTCCATTATTTCTATAATCATCTACTT 1326 32 100.0 34 ................................ TCAAATTGCTCAATAGAATATTCATCAGAAAAAG 1260 32 100.0 35 ................................ ATCAATAAATTTTATAAAAAACACAATTATAAATG 1193 32 100.0 35 ................................ TATAAATACTTGTAAAAGCCAGTAACAGAAGAATG 1126 32 100.0 35 ................................ TTCTTCAAAATTTGCTTAAAACTGACGACCTGAAG 1059 32 100.0 35 ................................ TAAATGATGATATTGAAATAGGTCAATCTTTAGAA 992 32 100.0 34 ................................ CAACATATAAATTTCTCTTTTATCCAGGAAGTAT 926 32 100.0 35 ................................ TCATGTTTGGACTTCCACCACTTATAATACTTTTT 859 32 100.0 35 ................................ AGATATAGATTTTGAAAATGCTTTAAAAGCTAATC 792 32 100.0 35 ................................ AATTAATAGGACTTTAAGTTGGATTTCTCGTCAAG 725 32 100.0 35 ................................ TCCAAGTGCGCCTATTAGTTTAGTATTTAGTACAA 658 32 100.0 34 ................................ AAAAGAAGACCAATAAAAAGAAACAACGATTTGC 592 32 100.0 35 ................................ CAATTACTACATCCATATCCTTTTGCATTTTCCAC 525 32 100.0 35 ................................ TAATAATCATCTTGTTAAAAAGAAAAAAATCATAA 458 32 100.0 36 ................................ CACAATTCATGTTACACTCAAGCGGCGCCTAAAGAT 390 32 100.0 35 ................................ ATTCATAAAACCCCTCCATTACATTATAGTACCAT 323 32 100.0 35 ................................ AAAATATTATAGATAGTAGCTTGAAAAGTTTACTT 256 32 100.0 34 ................................ CACTGAAAAAACTGATGAAACATAGATTTAAAAA 190 32 100.0 34 ................................ ACGATTATTTGCTATAGCTAAAAGTGTAGGTTAT 124 32 100.0 37 ................................ TTGAGAGTTGCGGTGATAATATAACAGTTTTTAAGTC 55 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 25 32 100.0 35 GTCGCATCCTATACGGGTGCGTGGATTGAAAT # Left flank : TTTTTATGAGGTAGAGGTGAAATATTTATGATGGTTTTAGTAACTTATGATGTGAATACTGAGAGTGATGGAGGAAAAACTAGGCTTAGAAGGGTGGCTAAGATATGTGTTAATTATGGGCAGAGAGTTCAAAATTCTGTATTTGAATGTTTAGTTAATCCAGCACAGTTTGTAGAACTAAAAAATTCACTATCTAAAACGATAGATTCTAATAAGGATAGTTTAAGATTTTATTTATTGGGCAAGAATTGGGAAAAAAGAGTAGAGCAAATAGGAAAAAATGATACATATCATCCACTAGATGATGCAATAATAATTTAATTTGCGAAAGGTAAGTGAACATGAAATACTGGGATGATTCGCACATGAAAATACAATAAAATTGTGAAGAAAACGTCAGATTTTAGATATTATACAAAACAGTATGAGTATTTTTTAAGTTTAATTCTAAAATTATATGATTATATAAGTTTAGTAATGAAATTATATGTAAAAATGCA # Right flank : TTAAAGATAAGACTAAAGAAGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 397-1808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYU01000169.1 Clostridium roseum strain DSM 6424 CLROS_contig000169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 397 30 100.0 36 .............................. TTTATTTTTTCTACAACGCCCCATTCGGCTTTATAT 463 30 100.0 37 .............................. CAATTAAAATTCGAAGCATATTGCCAATTGTTTGGAA 530 30 100.0 37 .............................. GGTTCATTAATTCAGAATAATTTAATAGAGCATAATT 597 30 100.0 34 .............................. TATTAAACGGTATAACCAAGCAACAATATAAAAT 661 30 100.0 35 .............................. AAACAGGTAGAAGAAATTAATAAATTACATGAGCA 726 30 100.0 36 .............................. AAACAGCGATGTAGCTAAAAGCTATAATATGAGTGA 792 30 100.0 36 .............................. GGACAGTAAGAACAATATAAGTATTGTTTTCTGTTA 858 30 100.0 35 .............................. GAAGAAAAGGGTATAGATATTCAAAAGATACCTTA 923 30 100.0 36 .............................. TGTCAGAAACCCTAAGTCCTGAATATATACCTAGTA 989 30 100.0 35 .............................. TATAAAACAGTAAGCCCATCATTACAAAGGATATT 1054 30 100.0 37 .............................. CTAATTATGAAATTACAAAATGATTACTCGGCAGTTT 1121 30 100.0 35 .............................. AAGTTTGCTATTAGTAACCATAACAAGCCCAATAG 1186 30 100.0 36 .............................. CATAATAGTAAACTTTTTTAACTATTTTGTAAATCT 1252 30 100.0 38 .............................. GGCGATACTGTAAAGCTGGCATGTAAAAGACATTTAAA 1320 30 100.0 36 .............................. GTTGGTGGTCAATATATCGACTGCATGAAGCATCAA 1386 30 100.0 36 .............................. ATTTCGTTCAATGTCATTAGAAGAAAGTTTGTTTTA 1452 30 100.0 36 .............................. TAAAATGACAGGTAAAAAAGGAGTGCTTTTTACTGC 1518 30 100.0 36 .............................. GATGTATAGATATTGTAAAAAGATATTAAGGGGCGA 1584 30 100.0 36 .............................. GTGAATATTTATACATACTTAATAAGTGATAATCGT 1650 30 100.0 35 .............................. ACGTTTAGTATAGATTGTAGCATAGCTACACGTGG 1715 30 100.0 34 .............................. GTATATTGTGTCTTTGATCCGCGTACTTTTGAGG 1779 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 36 ATTTAAATACATCTTATGTTAAAGTTCAAC # Left flank : TAAATTTAGAAACAGTTGCTCCTGGTTCTAGAAGGATAATGGGCTTCGCCCAAACCTCTATATGTGTATGTTAATGTTCAACTATTTCATATATATGGATACACTTTATATGTAGTTTTTAAAACTTATTGAGTAAATTGGTGAATTTAGAAACGTTTAATCACGGTTAAAGAAGGATACTGGACTTCGTCCAAACCTCGTAGAAGTTTAGAAGGATACTGGGCTCCGCCCAAACCCCACGTATTGGATTTTGTCTTTTTCTTACTTTCTATTATTTTTTCAGAAAGTGATTTTTCTGGGTTCTAGAAGGATAATGGGCTTTCGCCCAAACCCCGCGTAGGATTATGTTAATGTTCAACCACTTGTTAAAATTGCAGATGCACTTGGAATCTCATTA # Right flank : CACTGGTTTTAAGCCATTCTTTATTTTCATTATACTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAAGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 57-610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYU01000219.1 Clostridium roseum strain DSM 6424 CLROS_contig000219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 57 30 100.0 36 .............................. GGGTAATTGAACCCATGATATAAATGAATTTACTGC 123 30 100.0 34 .............................. TTATGGTTTTCGGTGAGCTACCTAAACCGAGAAA 187 30 100.0 36 .............................. GTTGCTTGATTAACTATAAAGTTCCAAAACTTTTTT 253 30 100.0 37 .............................. GAATACCATTAGTGCCTTGCAACAAGTAATATCGTCG 320 30 100.0 35 .............................. ATAAAAACAAGGTTGAGCAAATACAATACATTATA 385 30 100.0 35 .............................. TCAGCCTTTTTAATATAGCTATCTACTATTTTTCT 450 30 100.0 35 .............................. AATACACTTCCACCTGGGGAATTAAGATGTAAATT 515 30 100.0 36 .............................. ATTCCATATGCTTTGCCACAAGCTTGACAAAAGTGT 581 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ACATGAGATGTATTTAAATTTTTCCAATGCCTTTTTAGGGCTATCTCCATTATCTAG # Right flank : ATTAATCCCTTTCCAAAGCTAGTATTTAGGTTTTCGTTGAACATTAACATAATCCTACACGGGGTTTGGGCGAAGTCCATTATCCTTCTTTAACCTAGAAAAATTACTCTCTCAATATACAAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 60-545 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYU01000232.1 Clostridium roseum strain DSM 6424 CLROS_contig000232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 60 26 100.0 39 .......................... TATTCGTGAGGGCAATCACAACATGACCTATAAGGGTTT 125 26 100.0 39 .......................... TAATATACCATAATAGTGGCTGCCCTTGTAACCTTGTTT 190 26 100.0 41 .......................... TCTATACTTTGTCCCATTTATCCCACCACCTTTGATAGTTT 257 26 100.0 39 .......................... CAACTTATAGAAGGAAAGACAGGACTTACAGATGAGTTT 322 26 100.0 40 .......................... CTGCCAATATTAAATCCATATGGATCTATTCCTATTGTTG 388 26 92.3 40 ...........AG............. ATACTTTCGCAAATTTACTTAAAGTATCTGATTTAGGTTG 454 26 92.3 40 ...........AG............. TTAGCAGTAAATGTGTAACCAAATATAAACCGTAATGTTG 520 26 84.6 0 ...TA......A.T............ | ========== ====== ====== ====== ========================== ========================================= ================== 8 26 96.1 40 AACATTAACATGAGATGTATTTAAAT # Left flank : ACATGAGATGTATTTAAATTTTTCCAATGCCTTTTTAGGGCTATCTCCATTATCTGTTTA # Right flank : TTTAATACAAAATTGTATTTTAAATTTTTCTTAAGTTGAACATTAACATAATCCTACAAGGGGTTTGGGCGTAAGCCCATTAGAATCATGAACCAAGAGAAATCACTTTCTAAAAAACAAATCAAAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACATTAACATGAGATGTATTTAAAT # Alternate repeat : AACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.77%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1471-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYU01000179.1 Clostridium roseum strain DSM 6424 CLROS_contig000179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1470 30 100.0 36 .............................. TAAAGGAGCTGTAAATTCTACAAATAAGCAGTACAA 1404 30 100.0 38 .............................. TTTGGTATGCAGGTGCAAGGTATGGTTTTGCCGGTTGC 1336 30 96.7 36 .................T............ TTATATAAGAATTATCATCATCCCCCACTAAGGCAT 1270 30 100.0 36 .............................. AGCATCCAACCTTTATATACAGAAAAGATGAAAAGA 1204 30 100.0 36 .............................. TTTTTATAATAAAGATAAAGACCACACTTATAGCGT 1138 30 100.0 36 .............................. TTTATTTAAATTATTAATATATGCTTGTAATTGCTT 1072 30 100.0 35 .............................. TCGCTTATTCCTGGTATTTTATCACAAATAACTTT 1007 30 100.0 36 .............................. AATCGACCTTTTATAAATCTAATTTCTTTTGCCTTA 941 30 100.0 35 .............................. AAATAAGTTCTTTTACTGCGATTAAATCTGCCCCT 876 30 100.0 36 .............................. GCAAAATTTAATACATTGTTTGCCTCTGCATTTTCC 810 30 100.0 36 .............................. GATATTTCACTACTGGAACTTTGAGCAATTTTATTG 744 30 100.0 34 .............................. TAGACATCAAGGTAACTCCAAATACACCTTCCGA 680 30 100.0 38 .............................. CTTTTGCATGAGGTATTGTATAATGTGTTGCAACGCAA 612 30 96.7 36 ..............T............... TACAAATTGAAATTGCAAGTCCTGCTTTAATTTAAT 546 30 96.7 34 ..............T............... GACACTCAAGTAAGACCGCAGACAATAACAGATA 482 30 96.7 36 ..............T............... TGGCAGGAATTTAAAGCATTGGGTTAAGAAAGCTTA 416 30 96.7 37 ..............T............... AAATTCCTAAAATGTCCACTGATGGATTGGCAGATTA 349 30 93.3 36 ..............T...........T... AAAAATACTTAAATATAATAGCTACTATATAGAACT 283 30 96.7 35 ..............T............... CAGAAACACAATTTTAAATGGGAAGATAAGCCATT 218 30 96.7 36 ..............T............... TATTAAGTGCGAAAATAGGTTAGGCTCTGATAATAA 152 30 96.7 36 ..............T............... AGATTGTAGAAGTATAGTTATACCTAAAATATTATT 86 30 96.7 0 ..............T............... | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.3 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : AGTACATTAGTAAATTTAGAAACGGTTGCTCTTGGTTCTAGAAGGATAATGGGCTTCGCCCAAACCCCTCGTAGGTTTATGTTAAAGTTCAACTTAATTCTTGGTTTTTAACTAGCATTTGTTTAAGCC # Right flank : CTACTGGTTTTAAGCCATTCTTTATTTTCATTATACTCTTCTACACCGCATTATTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : ATTTAAATACATCTTATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //