Array 1 83548-82140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECTR010000028.1 Pseudomonas aeruginosa strain CCBH27346 NODE_28_length_84094_cov_23.866507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83547 28 100.0 32 ............................ TATTTGGGAGTACATGCCGCCCAGGCTGGGCT 83487 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 83427 28 100.0 32 ............................ AGGTTGCCGGAGTCTGCCGAACAGTTCTGGCC 83367 28 100.0 32 ............................ TCGATCCTGGGGCCGTTGTGGCCTCGCATAAT 83307 28 100.0 32 ............................ AAGGTTCGCCAATGTTCTACGACTGGATATCC 83247 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 83187 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 83127 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 83067 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 83007 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 82947 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 82887 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 82827 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 82767 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 82707 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 82647 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 82587 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 82527 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 82467 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 82407 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 82347 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 82287 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 82227 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 82167 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 133-2001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECTR010000029.1 Pseudomonas aeruginosa strain CCBH27346 NODE_29_length_75560_cov_21.128869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133 28 100.0 32 ............................ ACTAAAAGACTCAGAAATCGTGCACGCCTTCC 193 28 100.0 32 ............................ TGCAGACGATCAAGCCGGGTGCATCGAGTGAG 253 28 100.0 32 ............................ AGGCGATGGCTGAAGTTCCGGCTGATGCTACT 313 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 373 28 100.0 32 ............................ CGCAGTAGTACCCCGATCAGTAACGGCATCAG 433 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGCGGCGT 493 28 100.0 32 ............................ AGGGGGACGGCCTGTCGGCCAGTCAGTACCGG 553 28 100.0 32 ............................ TCTGGGAAACTGGTAATTCACATAGAGTGAAA 613 28 100.0 32 ............................ TCGGTCGGGCTACGCCTAACGTAACGTCTGCA 673 28 100.0 32 ............................ TCCAGGCTGCTGATGGCGTGTTCGAGGAAGGC 733 28 100.0 32 ............................ TGGATGTTGGTGGCGCCGTCCAGGGTGTAGGC 793 28 100.0 32 ............................ TGCGAGTCCAGAACCAGGTCGATGCCGACGGT 853 28 100.0 32 ............................ TCTCCGAGAAAATCATGACCAGCAGACGACGA 913 28 100.0 32 ............................ GGCACCTTCAACAAGCAGCTCGCCGCGCTGAA 973 28 100.0 32 ............................ TTGTCGTAGTAGGTGCTGACGCCACGGACCTT 1033 28 100.0 32 ............................ TCGGGCCATATCGTCGACGCCGACACCCGCAT 1093 28 100.0 32 ............................ TGGCGTAGGCGACGAGACTGTCCAATGGCCGC 1153 28 100.0 32 ............................ TCCATGTCCATGAACAACTCGGCCTGAGCCTG 1213 28 100.0 32 ............................ TGCCGCAGCGCCTGGCCCAGCCCGCTATGGTG 1273 28 100.0 32 ............................ ACAGGTCACAATGCGAACTGAACATCACACTC 1333 28 100.0 32 ............................ GGGACGAACATGCGCCGGAGATCGCAGCCACT 1393 28 100.0 32 ............................ GAACGGATCATCGGGTACCTCTACGAAACCTG 1453 28 100.0 32 ............................ TGGGCGATCGAGCACGGCATCACGCGCGAGAC 1513 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 1574 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 1634 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 1694 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 1754 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 1814 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 1874 28 85.7 8 ...................C..GT.G.. CCGCACGT TTCC [1896] Deletion [1910] 1914 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 1974 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12592-10526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECTR010000029.1 Pseudomonas aeruginosa strain CCBH27346 NODE_29_length_75560_cov_21.128869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12591 28 100.0 32 ............................ TCGCAGATGGGGGCAAGTTCTCGTTCGACAAC 12531 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 12471 28 100.0 32 ............................ ACGGCGTTACGTTACCTGTGGCGGCCGCAGGC 12411 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGATGTGTGT 12351 28 100.0 32 ............................ GCCTGGACAACCTCTACGGCCTGACCACGCTC 12291 28 100.0 32 ............................ TGACCACGCTCGCGGACAACATGGCCGTCATC 12231 28 100.0 32 ............................ TTCCATGCTGAGGGTAGCTACAGCACGAAGTT 12171 28 100.0 32 ............................ AAGTCCCAGGGCCAGTTCAAGCACTCTGGGAA 12111 28 100.0 32 ............................ TGCCCGGGTTGCCCGGGGCTCTCCACAGAAAG 12051 28 100.0 32 ............................ ACGCAATGTGGTTAAAGCAGTCATCGAGTTCG 11991 28 100.0 32 ............................ AGCACAGCGCCTCGACGGTGTCGTTCTGGTGG 11931 28 100.0 32 ............................ TACGAGCAACACGCCAACTGCACCGAGGCCAG 11871 28 100.0 32 ............................ ACCAGGGCGCAGACGAAAGCAGAGAAGGCCAG 11811 28 100.0 32 ............................ TATGGGTCGGAGGAGGCTTCGTCATGCCTGAT 11751 28 100.0 32 ............................ ACACGAACTCGCCTGGATAGAAGACATGGCAT 11691 28 100.0 32 ............................ TTGATCAGTCTCAAGGTGTGAGATTCCGCCCC 11631 28 100.0 32 ............................ ATGTGGTAGTCGGTGATAACGAAGCAGTTCAG 11571 28 100.0 32 ............................ TGACTTGGGCGGCCCACGAGGCATGGTTGAAT 11511 28 96.4 32 ................A........... AACATCGACGGGTCGAACTGCTCCGGCACCTG 11451 28 100.0 32 ............................ TGGAATGACCGGGCCGTCGCTGAACAGTACTC 11391 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 11331 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 11271 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 11211 28 100.0 32 ............................ TTGTCCGTGCGCGGCGCCTTGGGCAGAGTGAA 11151 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 11091 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 11031 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 10971 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 10911 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 10851 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 10791 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 10731 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 10671 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 10612 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 10553 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGAGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //