Array 1 17618-15735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAABP010000001.1 Streptococcus agalactiae strain iGBS485 NODE_1_length_169960_cov_52.0056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17617 36 100.0 30 .................................... TTTTGGAAATCCATATAATCAAATGATTTC 17551 36 100.0 30 .................................... TTCAAAATCTCTATTTGTAAAAGCACCTAA 17485 36 100.0 30 .................................... ATGGTCTTTTGGAACAAACTATTCAAGTAT 17419 36 100.0 30 .................................... CATAAATTGTATGATAAAGTAGCTGAATTA 17353 36 100.0 30 .................................... TTTTGGAAATCCATATAATCAAATGATTTC 17287 36 100.0 30 .................................... ATAGTATGCTTTTTTATTTGCGTTTGTTTT 17221 36 100.0 30 .................................... TATTCTTTAGATGCGTAGGACGACCAGTCT 17155 36 100.0 30 .................................... AGACTAAACCGTTGGGACATGAACCGTGAT 17089 36 100.0 30 .................................... AATATATAACGCAACTACCCTATTTAAAAA 17023 36 100.0 30 .................................... TTGCTGAATAATGGCTGTTTCTGTAATTTT 16957 36 100.0 30 .................................... AAAATCAGAACGCCTTATTTGAAGCAGTTA 16891 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 16825 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 16759 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 16693 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 16627 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 16561 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 16495 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 16429 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 16363 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 16297 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 16231 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 16165 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 16099 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 16033 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 15967 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 15902 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 15836 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 15770 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //