Array 1 121725-119836 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGKC01000006.1 Lacticaseibacillus rhamnosus R0011 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 121724 36 100.0 31 .................................... TTTAGAATACGATTATAAGACAGTAGTTTGG 121657 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 121591 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 121525 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 121459 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 121393 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 121327 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 121261 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 121195 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 121129 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 121063 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 120997 36 100.0 30 .................................... CTCGTGACTTGTCGTGATATGCATACGCGC 120931 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 120865 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 120797 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 120731 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 120665 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 120599 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 120533 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 120467 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 120401 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 120335 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 120269 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 120203 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 120137 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 120071 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 120005 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 119939 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 119873 36 86.1 0 .......................AA.C....G...G | T,C [119839,119845] ========== ====== ====== ====== ==================================== ================================ ================== 29 36 99.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //