Array 1 95999-94873 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDD01000003.1 Escherichia coli strain NS-NP038 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95998 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95937 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95876 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95815 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95754 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95693 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95632 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95571 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95510 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95449 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95388 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95327 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95266 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95206 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95145 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95084 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95023 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94962 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94901 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAATGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113238-111501 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDD01000003.1 Escherichia coli strain NS-NP038 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113237 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 113176 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 113115 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 113054 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112993 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112932 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112871 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112810 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112749 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112688 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112627 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112566 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112505 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112444 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112383 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112322 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112261 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112200 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112139 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112078 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112017 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111956 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111895 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111834 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111773 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111712 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111651 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111590 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111529 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //