Array 1 979617-979040 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT859958.1 Brevefilum fermentans isolate CAMBI-1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 979616 37 100.0 38 ..................................... AGGACCATTTATCAAAGGGGACACCTTCTCGCTTTAGC 979541 37 100.0 39 ..................................... GTATATGCCATTTCGATTAATGTATGTGCCTTGCTAATC 979465 37 100.0 36 ..................................... ATCGACAGTAAAGGGGCTTGATCCACTAAACTCTTA 979392 37 100.0 40 ..................................... TGTTTTGGTATAGGATTTGGATTGATTTCCACTCTCCCGT 979315 37 100.0 36 ..................................... GTTGCCGAGCAAGCGATTCAAAAGCCTGAATGTATT 979242 37 100.0 49 ..................................... GGGGTGCGCGCCAAACTTCTTCCTGAGTGCATATAACATGACACTCAGT 979156 37 100.0 42 ..................................... GTTGTAATTACTCCTTGCCAATAACCTTTGCCGTGTTCTTCT 979077 37 91.9 0 ................................T.T.G | G [979045] ========== ====== ====== ====== ===================================== ================================================= ================== 8 37 99.0 40 GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC # Left flank : GGGTCATGCCTGAGTTGCAATTTGGCACGCGTTGAATAAAGCCCTCGGTGGTCAAAAGCGTTATTGACTGGATTCAACCTGACCGGTGAAGAAATGACCAAGATGAAGATAGGGGTTGCAAAACGAATTCACCCCAAAAGCAGATCATATGCGGTATGATCGATTGTGTAAAACATGCAAAAGTAAAACGGAAGTGATTGGTCGGGTTGAGGTTTTGAATGAAAAGGATGTGATCGTTGTTTAATTTAAAACACGTTTTTTCAAAAATTCCGGGCAACAGGGGGGGTCGTGTAGGAATTCGAGATGCCCGGAAAAATATCGCCTTAGCCCCCATATATAGTGCTACAAAAATTCTTAAACCCCAATATATGGGGTTTTATTTAAATAATTTCCGGGCGAAACGGGGTTTTTTAGCAAAACCAAATTGCCCGGAATGCATCAATTTCGCAAGATATGGGGAAAATTTTAAAAAATATGGTATAATATCGGTAGATGTTGCA # Right flank : CTCATAGCTCAAAGCTCAAAGCTGAAAGCTAATCCCACTCACTGCGTTCGGGGACTGCAAAGCTGGTCTCACTTCTCGAAGCACTCCATATACCATGAAAGGGCATTGGAGCGTCTTCGCTCGGGGACTGCGAGACTGAAGTCTGATTCCGCTTGCACCGTTTCAGAGATCGTCTAGCTGACAGCGCAATAATTCGTCCTATCAAATGTTTGTCCGTAAAGAAAAAACCGAAAAGTATATTAAACCCCCGGTCTTCGGTCCTCGGTCTTCGGTCACTTTCAACTTTGACCATCTGTTATGATAAAGGCAGCCCTTCGGGGCATGGTATAGCTCATAGCTCATAGCTCAAAGCTAATCCCACTCACTGCGTTCGGGGACTGCAAAGCTGGTCCCACTTCGCGAAGCACTCCATATACCATGAAAGGGCATTGGAGCGTCTTCGCTCGGGGACTGCGAGACTGAAGTCTGATTCCGCTTGCACCGTTTCAGAGATCGTGTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 1080609-1082561 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT859958.1 Brevefilum fermentans isolate CAMBI-1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 1080609 37 100.0 38 ..................................... CTTATAACGATTTTGGGTCATGGGTAGCTCCTTTCAAG 1080684 37 100.0 36 ..................................... ATATCCAGTCCATTGCTTTTCTCCTTTTTGCGTATG 1080757 37 100.0 43 ..................................... GTTCACGCTCATAATTTGCTCCTTTCTGTGTTTAGAGAATTAA 1080837 37 100.0 39 ..................................... ACTGCCAGCACCAGCAACCCCGTAGCGCAATGCTTTTTC 1080913 37 100.0 36 ..................................... CCGAATCCCAAATACTACTCATAACATTTTCCTTTC 1080986 37 100.0 41 ..................................... AATTCTATTCCGTCGTGGTCTCGCCACGCCCCAGCGGGCAG 1081064 37 100.0 43 ..................................... GTGAAGGTTCTATAAAACTCGTTCACGGCTTGTGTGTTCAGGT 1081144 37 100.0 38 ..................................... TTATCAATCTCGATCCAAATGGCATTGGATGCCGCTTT 1081219 37 100.0 42 ..................................... TGTTAACCATGTGTCTTTCCCGTCCATGACGGGTTCCAGCGC 1081298 37 100.0 37 ..................................... TTTCTTTTTATTGAATCTCTTGACAAGGGTTTTGTAG 1081372 37 100.0 41 ..................................... TACACAAAGGCGTCATGGTAAATCCGGTACTGGAACAACCA 1081450 37 100.0 37 ..................................... GAGATACTGGTCAGGTTGCGGATGAACCCGACCTCGT 1081524 37 100.0 41 ..................................... TGCTTCTGGTCTACTCTTTTTGGCTTGTCTAAACTTGTTTT 1081602 37 100.0 38 ..................................... CATCACGCTAAAGATATACCCCTGGGCGTGTTGACTGC 1081677 37 100.0 44 ..................................... TATACATAACATCACCTCCAGGTGGTGGCTCTACGGGTGGAGTA 1081758 37 100.0 50 ..................................... GCTCTGTCACGAAACTCCGATTCACGTTCCTTCTCGATATTGATGCATTT 1081845 37 100.0 41 ..................................... CGTGAGGCAATCGAATATAAACATGCACGCCCCGCGCCGTT 1081923 37 100.0 42 ..................................... CTGGCTCGTCCACCTTCAACCAGTGTAGCAAATCACCATACG 1082002 37 100.0 37 ..................................... GGTTTTCAGGTCAAAAAATAGAATATCTCTCATGATA 1082076 37 100.0 37 ..................................... TCTGCCCAGAGGTGAGTATTTCATATTGATATACTCC 1082150 37 100.0 36 ..................................... TGGGGAAGGATGAAGTCGAGGTAAACTCCATCCAAG 1082223 37 100.0 36 ..................................... TGACGGACGGATATGATTTTGTCTCGCACTCGCAGG 1082296 37 97.3 38 ...........C......................... TCGGATATTGAAATACCCATGCACCTTTTTCGTACTTT 1082371 37 97.3 40 ...........C......................... ATCGCTGGCATTTACCTCTACCTCCGCCGTTTTGGACGGA 1082448 37 97.3 40 ...........C......................... GAGTCATCGTCCAGATATTTGGGTTTTTTCTTTAACCCAA 1082525 37 97.3 0 ...........C......................... | ========== ====== ====== ====== ===================================== ================================================== ================== 26 37 99.6 40 GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC # Left flank : CGATCGTCGGCGAACCAAATTGCATAAACTCTTAAAAAATTTTGGCAGTCCCGTTCAGTACAGCGTTTTTGAATGCCTGCTGACCAATGAAGAAATTTGTGAAATGAAAAGGCGGGTTAAAAAGATCATTCGCCCAAAAGCAGATCATGTGCGGTATTATCGACTGTGTAAAGCGTGCAAAGGTAAAACGGAAGTGATTGGTCGGGTTGAGGTTTTGAATGAAAAGGATGTGATCGTTGTTTAATTTAAAACACGTTTTTTCAAAAATTCCGGGCGACAGGGGGGGTCGAGTAGGAATTCGAGATGCCCGGAAAAATATCGCCTTAGCCCCCATATATGGTGCTATAAAAATTTTAAACCCCCAATATATTGGGTCTCCTTCAAATAATTTCCGGGCGAAACGGGGTTTTTTAGCAAAACCAAATTGCCCGGAATGCATCAATTCCGCAAGATATGGGAAAAACTTCAAAAAATATGGTATAATACCGGTAGATGTTGCA # Right flank : CTCAAAGCTTTTTTTATTCACACTTTTTATCATAGGTCCGAGCGGATGGGTTGAGATGGTTATGTTTTCCTGTCGGTTAGAAAAATTTTTTATATGGTGTGGCATAAAACCATTTTTTGTAAAATGAGTATTTGTGTTGTTGAAATAGATTGTTTAACTAAAACATTACAAGAAACCGATAAACACCAGAATCTGAGGTATAAAATGAAATTCCCATCAATGTGGATTATTCGTGCAGGCAAGAATGATATTGCAAAAGACATCTTCTTAACCAAAAATCGTATTGCTATTGGGTGGCCAAAAATGGGTGATTTGTCCCAATTGAAACCAAATCGGGATAGTTTTAAACAGTCATTATCAGAAGCTTACCCTGAAACGAAGGTCGGTGCGATTCCAAATACAGCGGGGCAACTGTATCGATTTGTTCACAAAATGATAATCGGAGATCTGATAGTTTTTCCGCCCATCACGGAGCAAATGGTGCATATTGGTTTAATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //