Array 1 26991-25897 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMO01000013.1 Lentilactobacillus buchneri strain S59 NODE_13_length_31347_cov_42.029901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26990 36 97.2 31 ................................C... CCCCAATCTTTTGCGCTTTCGTCATTCGCCG 26923 36 100.0 30 .................................... AAACAATTGGGTTGGTTTAATATTGAATTG 26857 36 100.0 30 .................................... TGCAAGAATCAACAGGTTTCAGTCATCGCT 26791 36 100.0 30 .................................... CTTCAGGAAAAGGAATCAGTTCAGCGGTTG 26725 36 100.0 30 .................................... TTCCCGTGCACCTTTTTCGCTGCTGTAAAA 26659 36 100.0 30 .................................... ACGGGGGTGGCTTTTTGTATGCCGCAACCC 26593 36 100.0 30 .................................... CTGAAGATTATTTGCTAATGATATAATATG 26527 36 100.0 30 .................................... ATTGATGGATGGTGGTCAACCATCTGTCTT 26461 36 100.0 30 .................................... TTGGCAGCACAAATCAAAGCATTGACACCG 26395 36 100.0 30 .................................... TATCGAACAATAAAAGGCGGTGTAATTATG 26329 36 100.0 30 .................................... GGAAATCAATTGGAGGGTATTACAATGAAT 26263 36 100.0 30 .................................... CAAATCAAATCTACATACTTCCAAATCATT 26197 36 100.0 30 .................................... ATGGATGAATAAATAGTGTCCATTTTAGAC 26131 36 100.0 30 .................................... TTAATGTATAAGTGGATCCCGAGATTGTGG 26065 36 100.0 31 .................................... ATGACAGTTCTGATGATGATTCAGTTAATGG 25998 36 100.0 30 .................................... CCGACGATCCACTAGCTGTGGAAAATGTGA 25932 36 83.3 0 ...............C........C......G.GAT | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.9 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : CAGCGATGGTGTCAGTGACAAGTATAATTCTGGCATTTTTAAGCAATTAGAGGCTGTGTTGACTGATGATCAGCGTAAATCGATAACTGATATTAATAATCAATTGTATACGGTCGTCCAGCAGTGTTTGTTTATGATCGACTTACCTCTGGAAGTCACTTATGATTGGGATTTAAAGAGGCTGTTTAAATACTGTAAAATTCATTTTAACGCTGATACCATGCTGAATCCTTATGCTATAATTGAATCAATTATCAAAATTCATTTAGAGTGTGGATTGAAGTCGGCTGTTGGTTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAATTGATCTATCCAAGCTCACAAGTTCCGCGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCGACTTTTACTACATCGACGAGGACTTTGTTGATTGGCATTTATAATGCATTAAAATTCGGTTATAAAAAATCG # Right flank : GGCTTCTCAACAGATCATTCATTCTGGATCATCTTCCACCACTAAAAAATAAGTTCTCCGCCTAGTATTTGCTAAGCAGGGAACTTATTGTGTTTATTTATTTAACAATTGACTTAGCCAACGCATACCCCAGCTTCTGAGCCGTTTGGGCAGTTGGATGAATCTCATGATCCTTCAAAGTGACATCCTTGTTGCTGTTAGTGATAATGTTGGGTGCGATCTGTTGGAAATTGACCACTTTGGCGCCCATTGACTTGTAGAGCCTTGCTTCAGCTGCCCGCAAGTCGTGGTAGGTGTAGCCATACATATCACTCATGTTGTCACGATTCATGCCATTGGCGTCAAACCGTGAAATTGGCAGGATGCCGTAAATCTTGGCGGACGGATTCAACTTTTGAATCATCTTAATGTTATAGCGCAGGTGGCGCATGACATTCTTCAAACTTCCCGAACCGGAATAGTTGGTGTAATCATTGGTCCCGATATGAACGAAGATGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 309856-310558 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMO01000001.1 Lentilactobacillus buchneri strain S59 NODE_1_length_610029_cov_47.240158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 309856 29 100.0 32 ............................. ACATGGTAGGAAAAGTCTTAGCGGCACACGTT 309917 29 96.6 32 ............................C AGTCTGGAGGACTAAACAATGAAAATAACCAT 309978 29 100.0 32 ............................. AGCGATAACTCTGCTCCAAACCCTTTGGCGTT 310039 29 100.0 32 ............................. CAAGTTCTGGTTTAGAACTTTAGGAGGTGAGC 310100 29 96.6 34 ............................A CCAGATACCGGTGGCACGATGATTCCTCACGATG 310163 29 96.6 32 ............................C GAACGTTTTACCCGCTCGGACAGCTCCGTAAT 310224 29 100.0 32 ............................. AATCTGATTTCGCTGCCCGCCTCAGTAACCCT 310285 29 100.0 32 ............................. AATTTCCGTGTTGGACGGTATGGGATAGGATG 310346 29 100.0 32 ............................. CCTTCTTGGTAATCTCTTTGTATTGCTCAGGA 310407 29 100.0 33 ............................. TCTTGAATCTGTTCATCCCGCTTGGAATCTTTG 310469 29 100.0 32 ............................. CACGGTGATAGATTTACCACGTGATTGGAGCT 310530 29 86.2 0 ...A........C........A......A | ========== ====== ====== ====== ============================= ================================== ================== 12 29 98.0 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : ACCACCATCTGAATTTCGCTTCAATTCTCGAGAAACCGTTGAACAACTTTTCTGGATCTCCTTGGCGATCGCACACAGTGAGTTTCCATGGCTCCGCATTAAGAATATTGTTTCTCGTTCATCTATGGTAATATGCTGGTAGTGGTTCATGGCTAGTTTCCTTTCATGATTGTTCTCGCAAACATCATTTTACAGGAATTTGGCCATGAGCCATTCTTTATTTAATTAGTGTTGCACTTAAAGTGTAAATTCAAGCTTAAAAGTTAAAAGCTGGACTAAGTCAAAATTGAATTAAACTTTGGCTTAGTCCAGCTTTGCTATAGTTATTCGGCCTTCGAATTCGATAGGTAATCCCTTAGATGCTATACTTAAACAAGAAAATTCTTTACTAAAGAGGTTAAGCTGAACTATTTCATCGATAATATTTTGTCCAGGTTAAAGGTCATTGAAAATGAGTGTTTTGTTATTTTCAAATGGCTCAACGACGGCGTTTGTTTAGT # Right flank : ACAATTACCCCCTTATTACCTACCGTACGGGGGTCAAGCATTTAGTGAGCTTATAAATGAAGTCCACTAGTAGAAAAGGAGGCAAGTGTACTATTTTACTTGTCTCCTTTTTGTAACCGCGAAAGTTCCCAGGGAAAGTTGATAGCCAATCCTAACAGGTGGCCCATCTCCGGAAAAAGCTAACAATAATAATGCCTGTGATGTCACTCACACACTCAAAGAAAGCGCTATAATGAAATTGAATTTTATGCCATAATTTGAATCACTGTTTGCAATCAACTCGGTAGCTAAGATTGTTTCTCAAAGTTCAATTGACCATCCATAAGTGATAATAAGAAACAATATAACCCACCACTAGGAGGCCCACCCAATGCCAACCCTATCAACAAAAGCCACAACCCTCTGGGCCAAAAAGCGCCCAACCGAAAACGGCAAACAACTATGGCTGCCGCTCATTATCCATCTAATCGATACCCAAAACGTCATTAACTACCTCTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320410-321108 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMO01000001.1 Lentilactobacillus buchneri strain S59 NODE_1_length_610029_cov_47.240158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320410 29 96.6 32 ............................G ACTATACCGAATCGTTCATGAAAAATCAATAA 320471 29 100.0 32 ............................. ATCCACGCCTTACACCTCTACTTCTTTGGTTT 320532 29 100.0 32 ............................. TACGAACCCAAATCGTCAAAGCATCTGGCATG 320593 29 96.6 32 ............................C CAAACGCGGAAGTCTTCAACGCTAGTGAATCG 320654 29 96.6 32 ............................C ATGTATCAGCACATTGATGGGTTAAGTGGTTA 320715 29 100.0 32 ............................. AGTGAGCGCGATTGTAGACTTCATCCAATCTT 320776 29 93.1 32 ...G...........A............. TAGTCATCGTTTGCGTGTAAGTTGATGTCGCC 320837 29 89.7 32 ...G...........A............C ATACCTGCCCGCCGTTTCCTGGAACGGACCAA 320898 29 96.6 32 ...G......................... CGGATTGAGCTTGTCAAAGAACAACAGGTCAA 320959 29 96.6 32 ...G......................... GTGGTCTTCACTGATGCCAATGATATTTACCT 321020 29 96.6 32 .............A............... CCTTACGAGACCCCGCTCGCTGCTCAGTATGT 321081 28 86.2 0 .............A........GG.-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.7 32 GTATTCCCCACGTGTGTAGGGGTAATCCT # Left flank : ACCAAGGATCGTATTATTTCTATTGCGGCTGTCAAACACAGCGGAGATGGGGATCCTATCAGCTTCCAGCAACTGATTCAAATTGATCAGCCGGTTCCCCATCAGATAACCGAGTTGACGGGGATTTTGTCAGAAATGCTGACTGAACAAGGCGTTAGCTTGGAGTCGGCACTGGCATCGCTACGTGATTTTATTCAACAATTTCCGGTTGTTGGGTATAATTTGCATTTTGATGCATCATTTCTTTCTATGGCTTTCAGGAAGCTTGACCAGCCTGATTTAAGCAATCAGATGGTTGATTTGATGCCGGTGGTTAAAAAGGTTAACCAATTTCTGGATAATTATCGCCTGGAAACCGTGCTTGCAGAATATCACATCAAAAATTCTGACCCCCATCGTGCGTTAGCCGATGCGAAGGCAACTTTGTCCTTAGCGTTGAAGTTGATTGAAAATGGCGATTTGACGATTTGAGAATGGCTTTAGGACGCGGTTTGTTTAGT # Right flank : TCCAATCCAAACCAAACAAAAAACGACTTCACCAACCAAAGGCAAAGCCGTTTTTCAACATCCTCAAAGATCCTTATTTCAAATACATCGCCCGCAACTTAGCAATATCGGTATTCGAAACCCTGAGGCCCTTATTCAAGAAATTATCCATCGTGCCATAATGCTTCTTCACCGCCGAGTAAGTGGCGTTGATGTAAGCAGGTTTGACATCTTCTAGTGCCTTCACTGTCTGGAGTTCCTTTTGAGAGGCGCCACTCTTCTTCAACTGAGCATAATGTTTTTCATAAACCCCCTTGGTTGCCAAATAGTCGTCGACAATCGTCAGCTTCTTGACGCCGAGTGCTGACAAGATGAAAATCGTTCCGGCACCTGCCCGGTCCTTGCCGGCTGAACAATGATACAAGACTGCGGAGTTCCCTTTATTATTCAAAAGAGTGGTGAATAGGTTGTGATAAGCGGTTCGAGCTTGTTTGGTAGTGACAAAATTTGTATAGCCCTGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 322330-323399 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMO01000001.1 Lentilactobacillus buchneri strain S59 NODE_1_length_610029_cov_47.240158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 322330 29 96.6 32 ............................C TTGCCGATCCACAACCGATGTAAATTCATCAA 322391 29 100.0 32 ............................. AGACAGGTGCAACTAGAGCCGCCGCAAAAATA 322452 29 100.0 32 ............................. GTTCACCCCGAAGTGTTTCAAGGCACTGGCAA 322513 29 96.6 32 ............................C AAGCGACTGAAAAAGCTAAGAGTACCAGTAAA 322574 29 96.6 32 ............................C GACTCCAAAGTCGGACCTCACCAAGAAGCAAT 322635 29 96.6 32 ............................C TCCAGGCAGGGATTTGCACCCTACAAGCCTCT 322696 29 96.6 33 ............................C CATCAGCTGATTATTTCAGGGTTTGAGACTCTG 322758 29 96.6 32 ............................C TTGATCCCGACGTTTCCACCTTTATCAAAAGC 322819 29 100.0 32 ............................. AGGAATGGCATATCGCGTCGCATCAATTGAAT 322880 29 100.0 32 ............................. AAGGCTGAAACTTACCTGAAGCGATTGATTGA 322941 29 96.6 32 ............................C TGGCGCTCGTGTTGGCGAGGTTGCCAATCTCA 323002 29 100.0 32 ............................. ATAAGAGTTGGGGGACAGCAGCCTTGCTCTCA 323063 29 100.0 32 ............................. GGTAGTCGAGCCACCGGATCCAAATACGATTA 323124 29 100.0 32 ............................. CTTCCAAGTGAGGCGGTAAGGAGCATTTTATG 323185 29 96.6 32 .......T..................... TACGGTGGCGATCACATTGACCCATACGGCTA 323246 29 89.7 32 ...........A.G...........A... TCACGGTGTCCAGATTTTTGCCGGAACTCCCA 323307 29 93.1 32 ...........A.G............... GCTCGCGCGGGACCCGGCTTCCCTGGACCCTT GGG [323325] 323371 29 89.7 0 ........T.....T..G........... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.0 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : CTTTTGATCGTTTTTCCATCAGTGGTTCGATACCCGCCCAAGTCTCGGACGTTCATGGCGCCTTTCAAATCAATTTCATGCACTTTGACTCCCTGGGTTGCCACGACCTGGGCATTTGCTGGAGCAACCGATTGGATGGCTGCGCCCGTAGCGGAGAAGACGGCCAGTGCCAGGGATGCAATCAGAACAGATTTTTTCAATGTGATTTCCTCCAAACTTTTTTGATTCAGTGTTTAGTTTACGGGAGGCGTGTAATGATTTTGTTTGCATAAGGTAATGATTTGGTAAATGATGCTTAGCAGATTTTTTGCTGGATACCAGAGGATCGTGAAATAAAATGGTTGATGGAGCTGTACACTATTGGGATAATTAAAACGGCAGAATCGGCTGATTTGTTTCATGCGACTAAATAATTAAGGTCAGATGCTTTCGTATTTGCAAGTCATTGAAAATGAGTGTTTTGTCATTTTCAAATGGCTTAATGGCGGCGTTTCTTTAGT # Right flank : TGCGACTAACGAACTTCAAATGATGGATTCTTAGTATTCCCCACATGTGTGGGGGCTCCTTTCTTGCAAAAAACTATTTTCACAAACGCGTTGGGTTGGCTCCAAAAAGGTGGAACACATTCAGAAAAGTTCAAGACAAAAATTAGCCTCTGATGGCGCAACAGTTGTAACCCGCCGCTCAAGTCCGGCAATAATTCTGCCGAAACTCAAAAATAGCACCTAACCAGTTGGCTTTCACCAACTAGTCAGGTGCTATTAGTATTTTGCGTAACCATCAACCAATTTCAAAACAGATACAATAATTTGAAAATGCCATATAGATTTCGTTTCTAACGATAATTGTCTAACATCTTAAACTTATGGTTGTCTTGGAAATATGCTCCAACCTTTAGCAACAATTTATCATTACCCTTAGCCGCCTCAAATTGAATTCCCAGCGGCATTTTCTGCTTGCTAACATATGTTGGTAAACTGATTGCCGGCTCTCCTGAAAGGTTGGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //