Array 1 87978-88188 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87978 29 100.0 32 ............................. TTCCGTGCCGCCTCCCATATCTCTCCCGCCTT 88039 29 100.0 31 ............................. GCATCTTTCGCGAACATGGGCGGCGCCCCCC 88099 29 96.6 32 ............................C GGGAGGGCCTCGTTCAAAACTTCCCTCCCCTC 88160 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : AGGTGAAGGCCGCCTGGGGTTCGCGGTACCCGGGGGTGGTGGGGCTTTGGGTACAGGATTCGGGGGCCTTCCTGCGGTTCTACGGGTACCCCAAGGTGCTTTGGCCGTACCTGCGGAGCACCAACCTGATGGAGCGGTTTATCCGGGAAGTGCGGCGGGGGACGAAGGTGCGGGACCACAAGTTTCCTAAGGAAGAGGCGGTGTACAAGCTTCTTTACCTGGAGTCGGAGAGGCAGGAAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTGCTGGAGAAGATGCTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACCCTGGGGGCGCGTCCGGCTAATGGCCGGAGGGGTTCTTGAAAAGGGTGCTCTTCGAAGCCCTGCCCTAGGGGACATGGCAATTTTGCCTTTCTCAAGGCTTAGCGGGGGTAAACCGAGGGTTTTTGCTGTGTAGATCATCT # Right flank : GCTATTCGGAAAGGCAAAAGGTTACCACAACCCTGGTCAACCCCTTTGAAGGGCCATCAACCCCGGACACTTTGGGAGCCGAAATAGAAACCCTACACCGTACCGAAAATCCCCATCAAGGGGGAAAGGACTATCCCTGATAGCTTGATGAGATCGTGTCTCCTCGTGCTCCGCCAAGCACCGGATGGCCTCCAGGTCCTTCTCGGTCAAGTTCATGCTGACCTGCTTCACCTTCCTTCATCCCCTTCCCCCCTCCAAGCCTGACGGGCGTGTCGCCGTGTGGATATTAGGCACATGCAGTATGTCCTAAAAGCACCCATCTGGCGAGGGGTGCCCCTGGGGGCATCTTGCCCCCACCGGGTCTAGCCCCAGACCCTACGCCACCAGGGCCTTCCTTCCCCAATGGCTTCCAGGAACTCCCGCTTTTTGAGAAGGAAAGCCTGCCCGTTCCCGCTGAAGCCGTTGTCGAAGGCCTGAAGAGGTACCAGGAAGCCAGCCTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 257262-256084 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 257261 30 100.0 38 .............................. CGGTAACCGCATCTTCTTGGTACTCCAGCAGGCTATTC 257193 30 100.0 38 .............................. GTGGAGGCCATGGACCCCCAAGCTGCTACCGCCACCCT 257125 30 100.0 37 .............................. GAGCATGCCCCAAATCTTCTCAATCATCATGACCCTC 257058 30 100.0 36 .............................. CCCTCAAAAAGTTCGTTTCCAATAGAGTTCGTGGCG 256992 30 100.0 39 .............................. ACCGCCTTGGGGGCCTCGGCCTCGGCCTTGGCCGCCCCC 256923 30 100.0 36 .............................. CTTCGGTATGCGGCCATAGGCTACGGGACTGCTCTG 256857 30 100.0 39 .............................. CCTTTATCGCCCATGAGGGCCACCTAGCGCAAGCCCCCC 256788 30 100.0 35 .............................. TACTGAAGCATGCTTTGGATAGCATGCTTCAACAT 256723 30 100.0 37 .............................. AGGCAAAAGCTGATATCATATGGGTAAACGCACGCTT 256656 30 100.0 36 .............................. ACCTTAATGCAAATCTAGCTTTATTTTCATTGAAAG 256590 30 100.0 35 .............................. ACCTCCCCCGGGGCCGCCTTGGCCTTGGGGGCCTT 256525 30 100.0 39 .............................. GGCACTGAGCCCGCCCCCAAAACTATGGCCGCCCTAGCC 256456 30 100.0 41 .............................. GGGCGGCTCTTGGACCGGGGGGTGGTGTGGAAGTCCCGCAG 256385 30 100.0 39 .............................. CCCGAAATAGTGGGGCGGAGGCTGGCGAGCCTCCGGAGG 256316 30 100.0 38 .............................. GCGGCTAGGTACGGCGACACCATGTACCGCCCCCTTTC 256248 30 100.0 36 .............................. CCTGCTTCCAGGGCGTCGGCAAGGTAGTGTCCGTTG 256182 30 100.0 39 .............................. GACAGGATGGGGGTGAAGTATGCCCGTCCAGGAACCCGA 256113 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 18 30 100.0 38 GTTCTGACCGTACCTATGAGGGTTTGAAAC # Left flank : ACCGTCGCCATTCCCTGAACCTGGACGTGGCGGAGGTCTTCAAGCCAGTGCTGGTGGACCGAATGATCTTCCGACTGATCCGACGGGGACAAATAAAAACCGGCCATTTCCTCAGGGAGGGTCAAGGGGTTTTCCTTTCCGAAGCGGGCAAGAGATTGGTGGTAGAGGAATGGGAAAATAGCCTCCAAGCCACCTACCGACACCTTTCCCTGAAGCGTTCCGTTTCTTACCGAACGACTTTGCGTCTGGAGCTTTACAAGTTAGAGAAACACCTTATAGAGGAAAACCCTTACATCCCTTACCGGTTTCGCTAAATTTGTTTTGGCTCCTATTTGCGCCAACCCCTAATCACCCCCTGACCCCCGGGGGGTTGACGCAGCACCCCTAAACCGCCTAGGATACCGATAGGCGGCTCATATTTTCCTTTGCAGCCGCAGGGGTTCTTGATAACAAACATTAACTTTTTATGAGAGCCTTTCGTCCAGAGGGCAGCTTCTGCT # Right flank : AGGGCTTCTGGAGCTGATGGCCTTTCTTAGGGTACTGGAAGACCCGGTGCTGAAGGCCAAGCAGGTCAAGGGGCTGCAGGACCTTGTGGGCGTGCTACAGAGCCGGAACCAACCCCTCCTCATCCACGGCCTCTTGGTGCCCACGGAAAAGCAGGTGGAGCAGGTACAACAACTGGGCCGGGAGCTCTTGAAGGCCCTTCAGGAGGAAGGGGCTCCCTCCTTGGAACTGGAAGTCCTTCCCCTGGAACGCTTGTGAGCCCCGGGAATCCCTGAAGGAGAGCCTTGAGGTAAACTGGGAGGGGTTATGGAAAGCTTGCTGGCCATCAGCCTAGGGCCGGTGCAGGACTTCATCGCCACCGCCCGCCGCACCCGTGACCTCTACGCGGGGAGCCGCCTCCTCTCCGAGGCCGCGGGCAAGGCAGCGGAGGTTCTGGCCGAGCGCCTTGGCCCCGAGAGGCTCATCTTCCCCGCCCCCAAGACAAAGGAAGAGCTAGCTAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 265902-266881 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 265902 30 100.0 38 .............................. AGGGTGCGGACCACCAAAGCGCCCCCCGCGTACTCAAC 265970 30 100.0 37 .............................. AGGGCAACCTGTGCGCCCCAGGGCACACCACTAACTC 266037 30 100.0 41 .............................. GGGTTGACCTCGGCCTTGGGGACCCCCTTATCGGCCTTGGG 266108 30 100.0 37 .............................. GGCCGTGCACGGGTAGGGGGGTGGACCGGGACAGCCC 266175 30 100.0 38 .............................. TGAGGCCCTCCATAGGGCTTGGCGTAGGGGGTGGGAAG 266243 30 100.0 39 .............................. TCGCTGTTCTCCATCTTTTTCCTGCGTGGGCTCCCAATG 266312 30 100.0 40 .............................. AGGGTATGGACCCGGGGGCGGTTGTAGCCGCCCTTAAACG 266382 30 100.0 38 .............................. GCACCCACTTGGTGAACAAAGTTTTTGCCACACGCCTT 266450 30 100.0 35 .............................. GACGGCCTGGACCCCCAGGCCGTTGCCGCCCACTT 266515 30 100.0 37 .............................. CCTTCCACAGCAACTTTTACTTTGACCATAACTCCTC 266582 30 100.0 37 .............................. GGCTTCGCCTTCGCGGCACCATCCTCTTCATCCCCTG 266649 30 100.0 37 .............................. TATTCTGGGGGCGGGACCGCGTGTCCTGCCCCACACC 266716 30 100.0 38 .............................. CCATGCGCCGCGCCATGAAGACGGGAAGCCAGCCCCCT 266784 30 100.0 38 .............................. GTTCCTCAATAGGCCACTACGGGGTCAACCCCGAGGGC 266852 30 93.3 0 ............................CT | ========== ====== ====== ====== ============================== ========================================= ================== 15 30 99.6 38 CTTTGAACCGTACCTATAAGGGTTTGAAAC # Left flank : AGGTGAGGTACTTATGTTGGGCGAGGTGGCCGTAGGTGTGGTTCAGGTCTAGAACATGTACGTGGTTATGGTCTACGACGTGGCGGTGGAGCGGGTGGTGAAGGTGCTTAAAGTGGGTAGGCGCTACCTCACCTGGGTGCAAAATTCCGTTTTGGAAGGGGAGCTCTCGCCCGCCCAATATGCGCGCCTGAAAGCAGAGGTTAGAAAGATCATTGAACCCTCGGATGCCGTGCGCTTCTACTTGTTTCCTAACCGCGATTCCTTGCGGATAGAAACCATCGGTTCAACGAAGAACGAACCAGACCAGTTTATTTGATTGGTCAGAAACCAAGTTGCGCCAACCTCCAATCACCCCCTGACCCCCGGGGGGTTGACGCAACTCCCCCGGGTTGCGTATTATGTCGTCAGGCGGCTCAAGAACTCCTATTGAGTCGCAGGGGTTCTTGAAAACAAAGATTAAAGCTTCATGAGTTGCTTACGTATGGGACGATATACCTGCT # Right flank : TATGTACACGTCAAAACCTCCATAGGGCATAACCCCAAGGGACTTCCGCGCCTTCCTCCCCCTGCACCCCAGAGGGCAAGCGCCCAAAGGGTGAGCAGGTCCAGCCCCGCCCGGAAGAGGCTCTGTCCCAGCCTCCCGTGCTTCTTGGGCCTCACCGGACGCACCCGGTGCAGCACAAGCCCCGTCCGAAACGCCCACACGAAGGCCAGGCTCAAGGGGACCAAAAGCCGCGAAAGCCTCTCCCCCCGCGTCACGTGCGTGGCCTCCAGGTCAAATCCCCGCCCCTTCAGGGCCCCAAAGAGCCGCTCTATCCCCCACCTGAGCCCGTACACCTCCAGCACCCGGTGAGGGTCCAGGTCCGTAGCCACAATCAGCCACTCCCGGACCCCAAGGCGCAACCCCACCACCCACATGCGCCGCCCGTAGACCCAGTACCGCCGCCTGGGCACCCGGCTCTCTCCCACCTTCAGGGAGGCAAAGAGCTCCCAGGCCCGAGGGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACCGTACCTATAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 268109-269685 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 268109 30 100.0 37 .............................. CGTTTCCACTATTATGGCTTGGACCCGTGGGCTCGGG 268176 30 100.0 36 .............................. GTGGAGAGCTTGGACCCGGGGGCGGCCGCCAGCCAC 268242 30 100.0 38 .............................. TGGGGGCTATGGTATCATCGGCCCACGGGGAGAACAGG 268310 30 100.0 36 .............................. CTACCACAGGCTGGATGGTACCGCTCCCGCACGGAG 268376 30 100.0 38 .............................. CCTCTTCATCTTCATCCTTATCCCCCCTTTACACCCTC 268444 30 100.0 37 .............................. TCGGGGAGGAGGCTTCAGAGTTCGGCATAGTGCTAAT 268511 30 100.0 40 .............................. TCCTCCGAGAGGATGGCGTAGATGTGCTCCTCCCGGACCA 268581 30 100.0 35 .............................. GAAGCCCAGCGTAAAAAAGAAAAATTTAAAAGCTA 268646 30 100.0 38 .............................. TGCCCCCCAGGAGTTTGAGGGGGCGTGAGGTTGAGGAG 268714 30 100.0 38 .............................. TAGATTAGAACTAGACCAAACTCGGTCTCCTCCTCAGA 268782 30 100.0 39 .............................. TCGGGCCGAGATAAACATCAGCCCGCTCCCATTCTTCCT 268851 30 100.0 36 .............................. GGAAAGGATCAAGACGGCCAAGGGGCGCAAGACCAA 268917 30 100.0 38 .............................. TGGGGTCTAACTGACCCTGTACCCCCATGGTGCCACGG 268985 30 100.0 36 .............................. AATGAGTTCTATGGCTTTCTCTTCCATCCTTTCACT 269051 30 100.0 40 .............................. TCGTGAGGTCGGCGTACCTCGGGAGGACTAGACTAGGCTA 269121 30 100.0 37 .............................. CCTAACCTGCCTAGCCTGCTTGCCTAACCCGCCTAGC 269188 30 100.0 36 .............................. AAAAGATTTGGGACATGCTCCAGCAGGCTATTCAGG 269254 30 100.0 37 .............................. AGCCCGCCCCCCTTTAGGGTGGACCTAGTCTGCTAGG 269321 30 100.0 37 .............................. CGCTTCCCCCCTCCCGCATAAATCTTTCCCATTGCCT 269388 30 100.0 36 .............................. CTGGGGGTGCGGGGAAGACCTCCCTGGCCCGGGACC 269454 30 100.0 40 .............................. GGTGCGCCGCACTCCTTTCGTCTAAGAGGTCCCGCATCCG 269524 30 96.7 36 .........A.................... TCAGAAGCCAAACAACAGAAAGAACTATCATCAGGC 269590 30 100.0 36 .............................. GCTGCCCGGTACACTTCTGGGCCTCGGGTGGCCCAG 269656 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================== ================== 24 30 99.7 37 CTTTGAACCGTACCTATAAGGGTTTGAAAC # Left flank : CAGGGGGACGGCCAGGCCTTGGTACAGGAAGGCCAGCATCAGGAGGTTGACCTTGCTCTTCCCCAGCTCCCACTCGGTCCGGTCCATGACCAGGAGGAGCCCTTGGGGTCGGAGGAGGGCGAAGATGAAGCGGGCATAGCCCTCCCCGTCCAGCCCCGGCCAGGCCAAGAACCGCTGGAACCTTCGGTAGGCGGAGCGGGGGTCAGGGCTGGCTATGGAGCCGAGGGAAAGAGCGAGTCTGGGGCCGCTTGTGGTGCGGGCGGTGACCAGAGCCATCACCAGGGCGGCCAGGAAGGTGAGGCGCCTGAGGTCGGCCTTCCAGTATCGCTTCAAGGCGTTGATGAGTGGGGTAAGCTGTTCCATGGGGACCACCTCCTATGGGTACCTGCCCATCCACGTGGGCGCAGGTCCATCCTAAAGGGGTGGTCCCACGTTTTGACGTGTACTGAGGGGTTTGAAACTTGCCGTTCTCCATCTTTTTCCTGCGTGGGCTCCCAATG # Right flank : TCTTGGAAGCGCTGGACCGCCCAGGGTGAGGGAGGCTGTCTTTGAACCCTACCTATGAGTTGACTGCATGGGGGCAGGGCCTCGAGGACCTCGAGGACCCCCAAACCCCCAGGAGTAGTCCCCCGGCACCCTCCTGTGCCCCATGGGGTGGGGCCTGATTGCCCCTCGAGGCCCACTTGTTCGCGAAACGTAGCTTTCGCGAAAAGAACCCCCAAGGGCCTTCCGTCTCCCAAAACCTCACGGGGATGCGTAGCCTGGTGTGGGTGAGAGATTTAGAGGGGATTTGGATTAGGGCCTCTTTTCACGGGGTCATAAATGCCGGGGAAAGAATCCCCTTTGGGGGAGTAAAGAAAGCCCCTGCGAGCAGGGTACCTGCAGGGGTGGACCTCAGGCCAAACCCAACTAGTGCCCGATGCCTCCGGCTTCCCCTCCAGGGTCGGCGGCGGAGGGTAGATCCACAACCCTAAGCACACCTGTGGACTGGACCTGGATAGCTTGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACCGTACCTATAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 1108124-1109506 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1108124 36 100.0 39 .................................... CCCAAAGCATGGCCCAGATGAGGCTCGCAAGGGCGCTGG 1108199 36 100.0 38 .................................... GTAAATGTCGCCACCCTGAACATGAATCTCCAGCCTAG 1108273 36 100.0 34 .................................... GTAGCCGGGCGCACCTACGAGAGCCGCATCCTAG 1108343 36 100.0 43 .................................... GCTAGGGGGCGCTAGCCCGCCAGTGTAGCCACATGGGCACTGG 1108422 36 100.0 37 .................................... TGCCCCGGCATGTGGGTGCCCGGTACCTGGCGGCCCA 1108495 36 100.0 43 .................................... CCGGTAGGCAGTCCGTTGAGCGCGTGGCCCCAACCCTCGGGAT 1108574 36 100.0 40 .................................... TGCAGATAGCCCCCTCACGAATAGTGACCCGCCCCCCACC 1108650 36 100.0 40 .................................... TGCAGATAGCCCCCTCACGAATAGTCGACCGCCCCCCACC 1108726 36 100.0 40 .................................... CTTGCAACATACCCGCCATCAGGGCTTGGGACGGCGTCAT 1108802 36 100.0 37 .................................... CTGTGGAGGCGGCCATTAGGGCCGAACTGGATCACCA 1108875 36 100.0 41 .................................... TTCCAACTCCTTCTCCCCAAACATGGCTCACCCCCTACGCC 1108952 36 100.0 36 .................................... TGTGTGCGGCAGTCCTTGCACCTGTCGGGGTAGCGC 1109024 36 100.0 39 .................................... TTCTCCCAGGCCAGGTTCCACCTGGCCTCCAAGACCTCC 1109099 36 100.0 40 .................................... GAATCCTACAGGGACTATTCCAAGAACATCATCAACTAAA 1109175 36 100.0 34 .................................... TCTTTCGTAAAATCTTTTGGTGTGGATTTGCGGG 1109245 36 100.0 38 .................................... AGCCAAGAACCCTAGCGGCGGTAGCGGCGTTGTTCCCC 1109319 36 100.0 40 .................................... GGGTCACCCGTCTGCCCACCCGCCCAGGCCGCAAGGGCCA 1109395 36 97.2 40 .....................T.............. TCCTCGGGCAGGGACCAGTACCGCCGCATCCGCCGGGAGG 1109471 35 91.7 0 .....................T.........T.-.. | C [1109501] ========== ====== ====== ====== ==================================== =========================================== ================== 19 36 99.4 39 GTTGCAAAAGTGGCTTCCCCGCAAGGGGATTGCGAC # Left flank : ACTCCTTCGTGTCCAGCACCATGGTGAAGGAGATTGCCCGCTACGGGGGGGATGTGTCCAAGCTGGTTCCCCCCGCCACCCTGCGGGCCCTCAAGGCCAAGTTTGGCTAGGCCAAGCGGTGGGGCTTTACTTGAGAGGTTGAAACCAACTATACTTTTCCGCCTTGACCGACGGATTAGGCCTTTTTCTCGCTTTACCAAAGCGAAGCGATGTCCCAAAGGGAGCTGAAGGGGCAAACTTGTACCGGGTATACCGTTCCAGTAAGGTGGTAGAATAGGGGTGCCTGGAAGCCCAGGCGGGCATCTTGACAAGCAGTTTTTGCCTTACCCAAGGGCAATATGCGCTTTAGAGTTCTTATCGGCCCCTTCTCCTGCGGCTTGCCAACGGCCCAAACCCCGCAAAACCCCCGTTATACGGCGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTAAGAACCCCGTCCTGGACGGGATTATGAGAGGGGTACC # Right flank : CCCCACCGCAGGCCATGGCGGGTGGTGGACCGGGCCCCATCCGGGGGTAAAATCCTCCCCGGAGGTCAGCATGAAGGCTTTTGCCAGCAAGTACGGGAATACCCTGGAGTTCGGCCACCTCATCGGTGGGGAGGAGGTGTGGGAGGGGGAGGCCCTGGAAAGGCATAACCCCTCCGACCGGGAAGACCTGGTGGCCCGCTTTCCCGAGGGCACCAAGGACACCCTGCGCAGGGCGGCCCTAAAGGCCCGGGAGGCCTTCGCCGAGTGGAGCCGCACCCCGGCCCCGGTCCGGGGGCAGGTCCTCTTCAACCTGGCCAAGATCCTGGAGCGGGAAAAGCCCACCCTGGTCCGCCTCATGGTGCGGGAGGTGGGGAAGACCTTCAAGGAGGCGGGCGGGGACGTGCAGGAGGCCATTGATACCGCCCTTTTCTTCGCCTCTGAGGGCCGCAGGCTCTACGGCCAGACCGTGCCCAGCGAGATGCGGGACAAGGAGCTTTTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGTGGCTTCCCCGCAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 6 1332117-1331398 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1332116 36 100.0 38 .................................... AAGCTCCTCCGAAACAGCCCGGAGGACCCTTTCGTAAA 1332042 36 100.0 40 .................................... AACTCCTCGAGGGGCTCCCCCTCCTCACTGAAGAGGGCGT 1331966 36 100.0 40 .................................... GGCTGGGCGTTGACCCCAAACTGGATTTTTTCACGCATGG 1331890 36 97.2 41 .................................A.. CACCTGAACCCGGCCACCTTGGGGACCTGGCGGGTCTCGTA 1331813 36 97.2 42 ..................T................. ATATATCATACCCCGGCATGGAAATCATGACATATACAATTT 1331735 36 100.0 40 .................................... AGGCGCAACCTGATGAACTCGTACCTAGCTAAGGCTATGA 1331659 36 100.0 39 .................................... GGGGATATCCCCGGGGGCGCGTAGCGGGCTAGCGCCTAC 1331584 36 100.0 36 .................................... TCGTCCCGTAAACTTCTAAGCTGCAGAGTTACAACG 1331512 36 100.0 43 .................................... TCAGGCGGAACAGATTGAGCCTGCCCCCGCTTCCTAGTAGCCA 1331433 36 94.4 0 .................................A.T | ========== ====== ====== ====== ==================================== =========================================== ================== 10 36 98.9 40 GTTGCAAAAGTGGCTTCCCCGTAAGGGGATTGCGAC # Left flank : GGAAGAGCGTTTCCTGCAGGAGGCTACCCACCCCTTGGGTTTCCGCAAGCCTTTGGGGGAGCTTTTGGAAGTGCAAGCAAGCCGCCTTCTGGGGGCCCTTCTGGGCAGGGAGGCGTACAGCCCCTTTTACTTGAAGGGTTGAAACCAACTATACTTTTCCGCCTTGACCGACGGATTAGGCCTTTTTCTCGCTTTACCAAAGCGAAGCGATGTCCCAAAGGGGGCTGAAGGGGCAAACTTGTACCCGGTATACCGTTCCAGTAAGGTGGTAGAATAGGGGTGCCTGGAAGCCCAGGCGGGCATCTTGACAAGCAGTTTTTGCCTTACCCAAGGGCAATATGCGCTTTAGAGTTCTTATCGGCCCTTTCTCCTGCGGCTTGCCAACAACCTAAACCCCGCAAAACCCCCGTTATACGGCGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTAAGAACCCCGTCCTGGACGGGATTATGAGAGGGGTACC # Right flank : CCTGCTGGGTTTTTGATATACTTAGTCTTGGTTTTGCCGCGACACAAGTGGCTTCCCTGTAAAAGAAACTCCATCCTAGAAGCTGGCCTTTTGGGGCAAGGTCCCGCAGAAAGTTGCGAATGAGGAAGGTTTCCCTAGTTCCGCTACCTCTGCCCCCAGATTTACCCACCCCCTGGCGGGTGGTGGTGCGGGAGCGGCTTCCCATGGGGGTGTACCGAGACGAGGATAAAGGGTGGTGGCTGGCCCTGCCTGTCCTGCAAGGCCTTACCCTCTACCGTTTGGGGATGGGCAGGCCCCTTATCTGGGGAATGGTGGTGGGAGAACTTTTCCTGTATCCCCCCACCCCCGCCAGCCGCCGGGAGCTGGAGGAGGGGCTTCGGGAGCTAGGGCTACCACCTGAGCCCCTTCGTGTGGGGGATACCCTCACCCTCGTGTGGGAGCTTTCCCCTTACCCCAACTGGGGAAGGCTTGTCCTGAAGGTAGAGGAAACGAGGCCAGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGTGGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1415586-1414650 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1415585 36 100.0 39 .................................... GAGGCCCTCCCTCTCACGATCCACCCCAGCTTGCCCTTG 1415510 36 100.0 38 .................................... CCACCCCGGCCCCATCCCAGGCTCAGGAGCGTGGACAA 1415436 36 100.0 40 .................................... TCCTTCCCCTTAGCGGGGGCCCCCTTCTTCTGTGGAACAG 1415360 36 100.0 41 .................................... GGCAGGCGTAGCCTCCAGGTTTCCGGCCTTCTCCCCTACCT 1415283 36 100.0 41 .................................... TCGTAGCGCGTGGGGGGAAGGGGGACCTTGAGGAGGCGCCG 1415206 36 100.0 42 .................................... TAGCCGGTGGGGCCGGAAAACGACCCCACCCTTACCTCGCCG 1415128 36 100.0 40 .................................... AGCTCCCTTATCCGCCTGCCTATCTCTACCATCACTACTA 1415052 36 100.0 39 .................................... CATGATGTGGTATTCGCCCACATGCCCCGTCGGACCGGG 1414977 36 100.0 36 .................................... CACTCCCGCTCCCCCCGCAGGAGGGCGTATCGTGCC 1414905 36 100.0 38 .................................... CCCTCCATTTTGGATGGTGTAGCGAAGCCACCATCCGG 1414831 36 100.0 33 .................................... ACACGATGGCCGCCAAGTTGAGTTTCTTCATGG 1414762 36 100.0 41 .................................... GGCTCCGGGATGGTGGCGGCCCTCGGCCTGATGAACCGGAT 1414685 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 99.6 39 GTTGCAAAAGTGGCTTCCCCGTAAGGGGATTGCGAC # Left flank : TCGGGGAGTGGCAGCCCAAGGAAGAGCGCCGGACGGAGCCCGCGCCCACCCGGCCTAAGCGGCGCCGCAGGCGGCGCTAAGCGGAAAAATTACGCCTGAACCTGCTAGTTTGCCTCTAGGAGGTTTTTCTTTTGCTTTTTGCTCGTTGCTATACCCAAACGCCTTTTTTGACGGAACAGGCACTTTTCTCGCTTTACCAAAGCGAAGCGATGTCCCAAAGGGAGCTGAAGGGGCAAACTTGTACCTGGTATACCGTTCCAGTAAGGTGGTAGAATAGGGGTGCCTGGAAGCCCAGGCGGGCATCTTGACAAGCAGTTCTTGCCTTACCCAAGGGCAATATGCGCTTTAGAGTTCTTATCGGCCCCTTCTCCTGCGGCTTGCCAACGGCCCAAACCCCGCAAAACCCCCGTTATACGGCGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTAAGAACCCCGTCCTGGACGGGATTATGAGAGGGGTACC # Right flank : ACCCCAAACGCAGAGCGGCCCCCTGGGGGGCCGCGGTTTGTTTTTGTTTTGGGGCTGGCCTTTAGAAGGCCAGGGTACCCGCCCCCACGGCGGAGAGGGTGGCGGCTTCCAGGTCCAGGCGGTAGGCCAGCACCTGCCCCCGGCGCCCCCTGAGGAGGGGGGCCAGGCTTGCCACCACCTCCGTGGCGTCTAGGCGGGTGGGGTTGGCCCCCAAGCGGGCCAGGGCTGCCTCGGGCTCCCCTTGGGCCAGCCCTTCCAGAAAGCCCAGGTCCCGCTTCCGGGCCTCCTCGGCCAGGGAGCGGGAAAGGGGCGGGTCCCCAAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCCAGGACCAAAAGCCCGGGGTAGTCCCGCAGGACCACCTTGAGGGCCTCCCCCAGCTCGGGGCTCCGCCTTCCCACCAAAAGGGGAAGGAACCGGGCTTCAGGGTAGGCCCCCTTGAGGAAAAGAAGGGGCAGTTCCAGGCTGTGCTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGTGGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 8 1697604-1697754 **** Predicted by CRISPRDetect 2.4 *** >NC_017278.1 Thermus sp. CCB_US3_UF1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1697604 29 93.1 32 ..........................GG. TTGCCTCACTCTTGGCTGGAAGAGGAGGTCGC 1697665 29 96.6 32 ............................T TTGAGGACCCCACGGGGCGCGGCATACCCACC 1697726 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : GGTGGCCACCTTGGGAAGCCTGTACTACTCCGAGGTGCGCCTTTTCCTGCCCTGCGAGCTCTGCTGGTACCAGCGCATCTTCATGTATCCGCAGGCCATTTTGCTGGGCCTAGCCCTCTGGCGGCAGGACCTCAGCGTCTGGCCTTACGCCCTGGCCCTTTCCCTCATCGGGGGGGGCATCAGCACCCTCCACCTCCTGGAGCAGAAGTTTCCTGAGCTTTTCACCCTGGCCTGCAAACCGCCCGTGCCCTGCTCCGTGGAGTACATGCCCCAGTTTCCCATCCCCCTCCAGGCCCTTATCGCCTTCGTGCTGATTGCGGTCAGCATGGCCCTGCTGGCGAAAGAAGCGCGGGGGCGGTAAGGTGCTATGCTAGGGCTAGCGCCAGACTGTTTTGCTTCTCCCTCGAGGCGCGGGGGCATCTTGACAAGGTTTCCCGGAGTGCTTCCCTAAAAAGGACATAAAGGGGGGTGAGCTGGGATTTTTGCCGTCTGGGTCATGT # Right flank : GGCACCCTTTGGCTAAACCGGATACCCTAGCCCCTCGAGGATCACCCGCACCCGCACGCCCAGAAGGTCCTCGGGGGCGTAGACCGCTTGCACCCGCTCCCATACCCCTCGGTCCGGGGGAACCAAGGCCACAAGGACGTGAAAGGGCTGCAGATGCTCTAGGGAAAGCCGGCCCCCGGCGTATAAGAGCAGATCCGCCCGCAAGGCCAGGGCCTGGACCTCCTCGGCGCGGGCCACCACCGGCCCCCTGGCCCGCTCGGGCAGGCGGGCCAGGAAGCTATCCCCCTCGGCGAAGGTGCTGGCCGCCACCGCCACCTGGGCCAAGGGCCTGAGGAAGGGCGCTAAGGCGGGCCGCAAGGGCCCAAGCCAAAGGGCCTTGGCCCCGGGGAAGTGCTGGCCCAAGAAACGCTCCAGGGCTACCCCTTCCGTGTACTGGCCCCAAAGCCCCTTGGCGCCAGGCACCGCCAGGTCCATGAGGCCAGCCGCCTGCGCCTCCGCCT # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //