Array 1 191543-194855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWN01000004.1 Bifidobacterium longum subsp. longum strain VMKB44 seq4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 191543 36 100.0 28 .................................... CACTTGCGGAAGTTGTCCGCGCCCAAGT 191607 36 100.0 28 .................................... TGACGAAGAACAATGTTTTGACTGAAGA 191671 36 100.0 28 .................................... GTTTAGCTAAGAACGTCAGAGTTACAGC 191735 36 100.0 28 .................................... CTACCGTGATTAGCTTCTTCATCTCGTT 191799 36 100.0 28 .................................... AAGTGCCATGGGGGATTAACAGACGAAG 191863 36 100.0 29 .................................... CGCCGAACAATCTTATTCAGCACTGATTG 191928 36 100.0 28 .................................... CTCACGATGGCGATATCCGCTCCCGCCG 191992 36 100.0 29 .................................... CCTGTTTGCCGTAGTTGCCGCTCGGTATT 192057 36 100.0 28 .................................... AGCATGGTGCGCACCGCCGTGTCGGTGA 192121 36 100.0 29 .................................... GTAGAGATGGAATCAATATGGCTTCTATG 192186 36 100.0 28 .................................... TTAACGTAAGAAAGGAGCGAGGATGAAC 192250 36 100.0 28 .................................... CTTTCGATGTCTTGTATCTGGTGACGTT 192314 36 100.0 28 .................................... TCGGTGACCTTCCACCAGGCGGCGACCT 192378 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 192442 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 192506 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 192570 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 192635 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 192699 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 192763 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 192827 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 192891 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 192956 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 193020 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 193084 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 193149 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 193214 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 193278 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 193342 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 193407 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 193471 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 193535 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 193599 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 193663 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 193727 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 193791 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 193855 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 193920 36 100.0 28 .................................... TCAATTCCGCGTCAACTTTCCAGCACAT 193984 36 100.0 28 .................................... GTAGGTACGTGGATACGTGGTCATGGGC 194048 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 194113 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 194177 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 194242 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 194306 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 194370 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 194435 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 194499 36 97.2 29 .................A.................. TCATGGGACTGTGAGCGGCGGCGGCGTGA 194564 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 194628 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 194692 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 194756 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 194820 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 52 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //