Array 1 339-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWVR01000017.1 Bifidobacterium breve strain CECT7263 BbreveCECT7263contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 338 33 100.0 34 ................................. CGTCCATCGCACACACAATGCAACAACCTGCGCG 271 33 100.0 33 ................................. ATGGCGCATGCCGAACGTATCGTAACCGATACC 205 33 100.0 35 ................................. TCATACCGTAGGTTTTACCCAAACCACGAGCGCCG 137 33 100.0 33 ................................. TCGGCATAATGCTGAGAGGGGCTTTTGAGTCTC 71 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TGTTTTCATAAATATATTGCTTTTTATGCATATATAAATTGTTGTAAGACAAATCCCAGTTTGACAATTTCATATCCATACACACAAAGCAGTTAGTCTTAGGATTGACTGCTTTTTAAAAAGACACCATTTAGGTGTAATGATGTCTTTTGGGTGTTATTTTATAGGTCATATCAAGGCTCATTCAATCGTGGTAAATTCGTGGTAAAATGAGTTTTTTCTATACTTCAAAATACTTGAAAGTATAGTGTTTATGCGGATAATCGAAAATTAGATATAAAATTTCTCCTAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TCGGTAAACTATGAGTCTTATGCGTTGCGCAAGTCAGTC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 73-1522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWVR01000025.1 Bifidobacterium breve strain CECT7263 BbreveCECT7263contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 73 33 100.0 34 ................................. CGTCCATCGCACACACAATGCAACAACCTGCGCG 140 33 100.0 33 ................................. ATGGCGCATGCCGAACGTATCGTAACCGATACC 206 33 100.0 35 ................................. TCATACCGTAGGTTTTACCCAAACCACGAGCGCCG 274 33 100.0 33 ................................. TCGGCATAATGCTGAGAGGGGCTTTTGAGTCTC 340 33 100.0 35 ................................. CGGTAAACTATGAGTCTTATGCGTTGCGCAAGTCA 408 33 100.0 35 ................................. ATAGGATGTAACGCACATGGATGGGGCACAGGATA 476 33 100.0 35 ................................. ATATATATTCCGTTTTCGTTGTATCCGAATTGTAT 544 33 100.0 35 ................................. CTCTACAGCGACACCCAATACGACGGCTACACACC 612 33 100.0 35 ................................. TTCATATGACAGCTACAGTTATGCAGCCGCAAGCA 680 33 100.0 34 ................................. CTTGAGGATGAATCCAGTCAGGCGATGCTGGACG 747 33 100.0 35 ................................. CGCCAGAACGTGGCGAAAGAAACCGGCAAAGCAGT 815 33 100.0 38 ................................. TCGCGGTGTTGAAGACCGTCACATGGGCGCAACTGTCA 886 33 100.0 34 ................................. TTGGGTACCTGCATCCCACGGCATTACCGGAACC 953 33 100.0 35 ................................. GACACCACCACTATGGACGGTAAAATGGCGCTGGT 1021 33 100.0 35 ................................. CCCGACAACATGCGCTACCTTGGCGGCGAGGTCAC 1089 33 100.0 34 ................................. CTCGTCCGAGATGGGGTATCCGAGGTCTTCGAGG 1156 33 100.0 32 ................................. TGCCACGGGTAGAGATGCACGTGGAGGAACTT 1221 33 100.0 33 ................................. AACGATTCGAGTTCGGGGTCGGCCATCTCGTCG 1287 33 100.0 34 ................................. TACGCATGTGTATGCGGTGGTCATTTCGGTTGCT 1354 33 100.0 35 ................................. ACCACCGATGCGGGCACCAGCATCAATGTCGTGAC 1422 33 100.0 35 ................................. GGGTTGCCGTAGGTGCCGCCGCCCTGATAGCCGTT 1490 33 97.0 0 .........................T....... | ========== ====== ====== ====== ================================= ====================================== ================== 22 33 99.9 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCGG # Right flank : TATGTCCAGCTCATGCTCATGCTCAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 57-963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWVR01000005.1 Bifidobacterium breve strain CECT7263 BbreveCECT7263contig05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 57 33 100.0 34 ................................. CTCGTCCGAGATGGGGTATCCGAGGTCTTCGAGG 124 33 100.0 32 ................................. TGCCACGGGTAGAGATGCACGTGGAGGAACTT 189 33 100.0 33 ................................. AACGATTCGAGTTCGGGGTCGGCCATCTCGTCG 255 33 100.0 34 ................................. TACGCATGTGTATGCGGTGGTCATTTCGGTTGCT 322 33 100.0 35 ................................. ACCACCGATGCGGGCACCAGCATCAATGTCGTGAC 390 33 100.0 35 ................................. GGGTTGCCGTAGGTGCCGCCGCCCTGATAGCCGTT 458 33 100.0 33 ................................. TATGTCCAGCTCATGCTCATGCTCAAATACGCC 524 33 100.0 34 ................................. AGACTGTTTATCGCGCGTCTCACGCGCTTGCGTT 591 33 100.0 33 ................................. TCTCGGACTCGCTGGCACGCGCTAACGCGGCCA 657 33 100.0 37 ................................. TGATACGGCGTATTGACAATATCATGCGAAAAATCAA 727 33 100.0 35 ................................. CCTGATTTTAACGCGCCGAACGGTATCCCCGTAGT 795 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 862 33 97.0 36 ....A............................ CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 931 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ===================================== ================== 14 33 98.7 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CCGGGGAGCGTGGATTGAAATCCCGACAACATGCGCTACCTTGGCGGCGAGGTCACG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //