Array 1 258557-259090 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOUG01000002.1 Lactiplantibacillus pentosus strain AWA1501 sequence002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 258557 36 100.0 30 .................................... GATCTAAGTCATGTCGCGGGGTGGTTTTTC 258623 36 100.0 30 .................................... ATTTACAATTGTAATCAGGGTACGCGCCGT 258689 36 100.0 30 .................................... CTTTCATTTCGAAATATTTCGTTTTCAGGT 258755 36 94.4 30 ...........C.......................T GTTGAAATGCAGATTGCAACAAGCGTTAAA 258821 36 100.0 5 .................................... TTTGA Deletion [258862] 258862 35 77.8 30 CG..GT....-..T....C.T............... CCTTGCTGACGGTAAACAGCGCACCAGATA A [258880] 258928 36 100.0 30 .................................... TTTACCTGCCGTATACGCCTGATACTCCAT 258994 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 259055 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 93.2 26 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGACCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGCAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : TAACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 840-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOUG01000025.1 Lactiplantibacillus pentosus strain AWA1501 sequence025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 839 28 100.0 33 ............................ TATCAGCGCTAACTAATGCAAACCGCTGCTTGG 778 28 100.0 33 ............................ TGTAAGGGTCGTCAGTTTGTGAATAATCTATCA 717 28 100.0 33 ............................ TTAAACCGGGCAACTATCACGCGGTTGCGCAAA 656 28 100.0 33 ............................ TGTACCTGATCCAGATTGATTAACAAAATGGGC 595 28 100.0 33 ............................ TTCTGTTCCATCAACTCATTAAAAGCCCGAGTG 534 28 100.0 34 ............................ TATGAGTCGGCGGCGTTTAGTTGCCAGCTTGGAA 472 28 89.3 33 ..........C.C............C.. CTGGGTAAGTCAGTCTTGGCGAGACACCACCGT 411 28 89.3 34 ..........C....A....A....... CCATTTTTTGCAAAAAAGAATCAGTCTGACTGGG 349 28 96.4 34 ..........C................. CCAAATTTCGCCAACCATTGCGACGATTGCTCGC 287 28 82.1 33 ..A............A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 226 28 82.1 0 .....T....C..G...A........T. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 94.5 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : AATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGCGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTGGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGTGCGATTCGTTAAATCTTGAGAAGCGATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACGCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 115273-114653 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOUG01000004.1 Lactiplantibacillus pentosus strain AWA1501 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 115272 28 100.0 33 ............................ TGAAAAAGTGGAAACAGTTCAAAAGCAAGTAAG 115211 28 100.0 33 ............................ CAAGATATTAATTCATTGACGTTGTTCAGTGAT 115150 28 100.0 33 ............................ TATATACTTGCTTGCGATACACGTGTGTAAATA 115089 28 100.0 33 ............................ TGGTTTCAGCCAATTTAAACGCCATTTTTGACT 115028 28 100.0 33 ............................ CTTCAATCTGTGGACGTTAACGATCGCCCAATT 114967 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 114906 28 92.9 137 ..T..........G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 114741 28 89.3 33 ..A.........C..A............ TCCAATGTGACTAACTGAAATTTCTACGCTAGT 114680 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 9 28 95.6 46 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : ATTATTTGCACATGGTTGATTAAAAGTAGCCTTTTGCCGGTAAACTTCGTGCGTATTTAGAATTCATATTTTATTAAGCGTTTACAATTTATTGTGAACATTGCTGCCAATCCTGAATTATACCGACAAAAACTCGTCGGCTCTCATCCGTACATTTTTGTCAGAACCCTAAACTGCTTGTGAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTTGATGGATTTTCGATAAATTATGACGACTAGTTTGTATCAAGACAGTCTGATATGTCCAGTTTTGAAGTTTCCCAATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATATACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGTA # Questionable array : NO Score: 4.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118707-117892 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOUG01000004.1 Lactiplantibacillus pentosus strain AWA1501 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 118706 28 100.0 33 ............................ TTAGTGGCGTTGTTGAGCGATTGCGTTAGTTGA 118645 28 100.0 33 ............................ CAACACGGCGTGAGAATCGGGCCGAAGAAGGTC 118584 28 100.0 33 ............................ CGGATTGCCTTTCATAGCGAATTCTTGCGCGTC 118523 28 100.0 33 ............................ CTACTACAGCCGTATTGCTGCAGACCAAGAGAA 118462 28 100.0 33 ............................ TGCCGACCACTTGACGTCGACGGAATGGTGCCG 118401 28 100.0 34 ............................ TATGACTTAGAGCACCCAGTAAAAGCCGGAATCA 118339 28 100.0 33 ............................ TGATAGTCCGGAGACGGGCAACAAAGAAATGGT 118278 28 96.4 33 .......................A.... CATTGCACATGTGGCCAAAACGTCGACGCCGTA 118217 28 85.7 35 ...............A..A..A...C.. TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 118154 28 92.9 34 ...........A...A............ TTAACACGCCGGTAGTCCCGTTTTTGGGGGATTG 118092 28 89.3 33 ......T........A.....C...... CATGACTGCGCACTATACTGAGTCAGCCCGACT 118031 28 78.6 33 ..T.....T......A.A..A.....T. GAGGTGCACTCTCGTGAGAAGCGTAGACGCTAG 117970 28 85.7 23 ......TT...........A...C.... TCGCTGAATCGATATCCACCATT Deletion [117920] 117919 27 78.6 0 T.A............A......C-...T | G [117894] ========== ====== ====== ====== ============================ =================================== ================== 14 28 93.4 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGATCAAACATTCACGCCTATTAAACGTCGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCATCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //