Array 1 19566-20855 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPJ01000013.1 Nitrosomonas sp. Nm33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19566 36 100.0 30 .................................... TAACTTTAGAGTCATTTGGCATAGTGATAA 19632 36 100.0 30 .................................... TCTGGCCGGTAACACCATTACAGCGCGCAT 19698 36 100.0 30 .................................... TTGATCACGAGCGCACAGGGATATTTTGGC 19764 36 100.0 30 .................................... GTAATCTCTCCAGCGAGGTTCTCATAATGG 19830 36 100.0 30 .................................... TGCAGCATCATGTGATTGAACTGCTGTGGT 19896 36 100.0 30 .................................... TAATACGTATTGCGCCGCCATCAATTTTGA 19962 36 100.0 30 .................................... ATTTTAAATAAACAATCACTATCAAGACGG 20028 36 100.0 30 .................................... TGTAACGTCTTACCTGCGCCATCAATATTC 20094 36 100.0 30 .................................... ACTGGCGAGATATTCACAAATGCTGAAGAT 20160 36 100.0 30 .................................... CATTTGCTTAGTATTCACGTATTCCTTCAT 20226 36 100.0 30 .................................... CGAAAGACTTATATTAGACCTTGACCATAT 20292 36 100.0 30 .................................... ATTCCCCACTTTTACACTACTGCCAGTCTT 20358 36 100.0 30 .................................... ACAATACAGATGCTAGCCCACCAGCAGCGG 20424 36 100.0 30 .................................... TATACGATCTTTGAGTTTCCGCATAATTTT 20490 36 100.0 30 .................................... ACCATCACGCCTAACACCACCGCCGGTCCA 20556 36 100.0 30 .................................... TTCTGCCGGTAATTAGCGCCATATTCAATA 20622 36 100.0 30 .................................... GGGTGGAACGAATGCGGCATGCGTACATAG 20688 36 100.0 30 .................................... TCGGTTACAGTAAATGCTGGTTCCGAGGCA 20754 36 100.0 30 .................................... ACCATTCCGAATGAGTTGAAATGACAGAGG 20820 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 AGTTTAGCATATTGGGATCTGTGCTCTAGCCGGAAC # Left flank : CTTCACTGGCTCAAGTTTTTATGAGCGAGAGAAAAAAACTTGATTTGCCTCTGCCAGGGTTGCCACTCGACCTTGCTGCATCACTCAAGGACGACTAACGTGCCATGCTTTCCGGATATCGCTTAATGTGGATTGTCGTTATGTTCGATTTGCCAGTGGTTGAAAAAGATGAACGTAAAGCAGCTACAAATTTTCGCAATGCCTTATTGGATATGGGCTTTGAGATGTCACAGTTTTCAGTTTATATGCGCTTTTGCAGTAGCCAGAGCCAGATAGACACCTACTGCGCACAAGTAGAAAAAATCTTGCCTGGAGGTGGAAAAGTCAATATCCTGCAATTTACTGATAAACAATATGAACGCATCATCACTTTTCATGGCAAAGCAAAACAATCAAATAAAAAATCACCAGAGCAGTATGAACTTTTCTAATAAAAGTTATTTTTTCTTTATTTCCGATTACGTTAACTCCATGAATAATCATGGAGTTAACGTGCCTGG # Right flank : CACAATCAGAAGAACAAAAGGTGTCAGTCATTGCATCTTGCAAAACGAACGAATTGACCAACTAACAGTACTGTAATGAACATTAAAATACGTTGCAATTTCAAACATTGTGTAATATCCCGTTTTGTATAGCGCATTCATTGCTTCTCCTCTATCAGTAATGCCGGCAACAATTTCATCCATTGGTTTCCTGGGCGATTTCTTCGATCGCTTGGTAATATGAATACTATTACTTTGCTTCAAACTAATATATTTTTGCACCTCACCAATAAAAGCATTATCGAGTAAGGTTAGGCATGAAGCGCCTCGGCGAACTCTTCTGTGGAAACGCCAGCCTGCTTGAGAAGACCAGCCAGCGTACCGATCTTCAACTCGTGATGGTTGGGAATAACGCAGCCAGACGAACCGCGGCGCATGACGATGTGGCTTCCGCGTTGACGGACGACGACGAAACCGAACCGTTCCAAGGCTCGCACGACCTCGGCCCCGGACACAACCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCATATTGGGATCTGTGCTCTAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 75856-77961 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPJ01000002.1 Nitrosomonas sp. Nm33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75856 29 100.0 32 ............................. ACAATGCCTGACTTAAAACAGTGGTCATAACC 75917 29 100.0 32 ............................. AATGACTACCGCTACTATTAACAATAGGACAA 75978 29 100.0 32 ............................. GTCGCGCTAGTTATGCGGGTTTACAGACTTGC 76039 29 100.0 32 ............................. GATCGAGTGATTATCCTGGCTAGCTGCTATTT 76100 29 100.0 32 ............................. ATGTGATTTAGTAAGCTCCTTGCCCATAGTCC 76161 29 100.0 32 ............................. TTTGCCCCTCCTTTACAGCTTGGTTTTGCTGT 76222 29 100.0 32 ............................. TGAGCTGGCAAAAGTATCCAGGCAGGTTATCG 76283 29 100.0 32 ............................. GCATGTCCACCGACCAATTCAGTACGCGCGTG 76344 29 100.0 32 ............................. CCCTGATCAGCAGATTAGTTCTTGATTCCTCC 76405 29 100.0 32 ............................. AAATTGGATATCCTGTGGCGTCATTCTGATGA 76466 29 100.0 32 ............................. AAAACATAGTGCTAGTATTTAGAGAGTGCCAT 76527 29 100.0 32 ............................. TGTAACTTACGGAAAGATTCTAAATGTTTGTC 76588 29 96.6 32 ............................A ATGCGATAAATAATCTCCTGGTTTGTTTCGCC 76649 29 100.0 32 ............................. AATCTGCAGGTTGGCAAGATCGAGGAAAACCT 76710 29 100.0 32 ............................. TTTGCAGTAATCGTCTGTTCTTCGAGGGAAAT 76771 29 100.0 33 ............................. ACCGGAACTACACGTACAAAACGTGAATTGCAC 76833 29 100.0 32 ............................. GTCTTTTTACAGCATCTAGCCGAGAACTCTTA 76894 29 100.0 32 ............................. CATCTATTTGCCCGATTTTTTCAACAACTACA 76955 29 100.0 32 ............................. GCGTTGATTCGATAGAACCTGATAGGCTTCAA 77016 29 96.6 32 .....T....................... AATCCCCTGTTGCGTCACGCCACTCTTGAGAC 77077 29 100.0 32 ............................. TAATGACTGATAAGAGACCCCGCTCAGTTGCC 77138 29 100.0 32 ............................. GCGCTTCGAGTCGGGCTCAAGAAAGCGAATCA 77199 29 100.0 32 ............................. CAGTAATCGAATAGCCAGATCCAGAAAGATTA 77260 29 100.0 32 ............................. CATTCATTCTAAATCCGTTTTGTTCTGAGCGG 77321 29 100.0 32 ............................. GGATGCTGAGGAATCGGCCGCTCTGTTTAGGA 77382 29 100.0 32 ............................. ACTCGGAGTCCCTGATATTTTTTTCAATTCTA 77443 29 100.0 31 ............................. GATATGCCAGTTGGTCAATCACCTACTACAT A [77471] 77504 29 100.0 32 ............................. CTTCCCGCCGGCAAAGGGTTGGTTCCATCTTT 77565 29 100.0 32 ............................. CCGGGTTTGTCTGGCTGCGCTATCTGGCGCGA 77626 29 100.0 32 ............................. ATCCCCAAATGGGCCAGGGAAAATCCTGACCG 77687 29 100.0 32 ............................. CACGCGATGGCCTGCACGCGCCAGGTTGATGG 77748 29 93.1 33 ............A.......A........ CTGGGTTGATTCCGCCGCAAACGGAACGGTTAT 77810 29 93.1 33 ............A.T.............. GACTGGTGCGAGCGTTACTCAGAGTAAAACCAT 77872 29 96.6 32 ...........A................. GTCGGACCTGTCGTTGGGGTGACCGTCTCGAA 77933 29 86.2 0 T...........A..............TA | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.9 32 CTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TCGGGATGTATTTCGTGAAAGCAAATTGCTTGAAAAAATCATACCAGGCATCGAGGAGATGCTTTCTGCTGGTGAGATTCAACCCCCTGCTGCGCCGGATAACGCTGTGCAGCCAGCCATACCAAATCCTGAGAGTCTAGGCGATGCTGGTCATCGTGCTTGAAAACGCTCCGCCCCGCTTGCGTGGACGACTGGCTATTTGGTTGCTGGAAATTCGTGCAGGTGTTTACGTTGGAAACTATTCAGCAAAAGTACGTGACTATATCTGGAGTCAGGTCGAAAAAGGAATTGAAGATGGCAATGCCGTGATGGCATGGCGTACCAATAATGAAGCCGGCTTTGATTTTGTGACATTAGGTGCTAATCGAAGGATACCGAATGAAATAGATGGTGCAAAGTTGGTTTCTTTTTTGCCTGAAGAAACAGGAGAAGCTCCTTAAAAATTTGGTAGAATTTTGCCTTCCTTTTTACCGCTGAAAAATCAGCGGGATAGGGGAAGT # Right flank : AGGGGCGTGTGTTCCGTTCGCTGCCGCACAGGCAGCTTAGAAAACAATATATCAATGTCGGTATATCATGTTAAAACATGAATGGAAAATAAATCATCAGAAAACTGGAAACTGAAGACTCGATAGAATCAATGGCAGCTATCACATCATGCATAAAGATGGTATTTCTGTGAGTGTTCCTGTTTATGGTTCTAGAGGTATTAAAAAGACACGTTATCAGCAATCGAGAAACAAACAAGGGTGAAATTGAAATGAATACGCTCTATCCTGCAATTCCCCCCGGCTTTGCTGTGCAATTTGTCGATATTGAAGAAGCGTTTACGGAAGGCGAGACTATCAAAGAATGCTTGTTTAACGGCACAGAGGTATTGTCTGGAATCCTTGAAGTATATCTTGACGAGGTCGTGAAATTCCACACCCCAGCGAGCGCGCCGACCACCGCTGCTCGCGCGCTTTAATCGAGGCCGTGACCAACCCTGAGGAGGGGATTTACGTCGTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //