Array 1 130331-121187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037978.1 Rathayibacter toxicus strain WA40-23C chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 130330 29 96.6 32 ............................T AAAAGTGTCGCGCGTGGATATGCTCAGACTAA 130269 29 100.0 32 ............................. GAGGTTGACAATGGCTCGTGGGTCAACGGCTC 130208 29 100.0 32 ............................. GTTGCCTTAAGAAGCGAGTCTAGGATGTTTGC 130147 29 100.0 32 ............................. TCCCGGCTCATATATGACGTAGCGTCGGTGGT 130086 29 96.6 32 ............................A AACTGCGCGGGCATCAGGGCGGAAAGCTCATC 130025 29 100.0 32 ............................. TACCCCACGGACGACGGCGGAATTACTAGGGA 129964 29 96.6 32 ............................G ACGTCGAGCGACATGTCGAACTGTATAGGGCG 129903 29 96.6 33 ............................T AGCTAGCGCCGCATCCACAAAAACCAGAACATC 129841 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 129779 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 129717 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 129656 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 129594 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 129533 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 129472 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 129411 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 129349 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 129288 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 129227 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 129166 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 129105 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 129044 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 128983 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 128922 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 128861 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 128799 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 128738 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 128676 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 128615 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 128554 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 128493 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 128432 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 128371 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 128310 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 128249 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 128188 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 128126 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 128065 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 128004 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 127943 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 127882 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 127821 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 127759 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 127698 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 127637 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 127576 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 127515 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 127453 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 127392 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 127331 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 127270 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 127209 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 127148 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 127086 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 127025 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 126963 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 126902 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 126841 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 126780 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 126719 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 126658 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 126597 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 126536 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 126475 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 126413 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 126352 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 126291 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 126229 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 126167 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 126106 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 126045 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 125984 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 125922 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 125861 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 125800 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 125739 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 125678 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 125617 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 125556 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 125495 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 125434 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 125373 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 125312 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 125251 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 125190 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 125128 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 125067 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 125006 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 124945 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 124884 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 124823 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 124762 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 124701 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 124640 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 124579 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 124518 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 124457 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 124396 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 124334 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 124272 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 124211 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 124149 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 124088 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 124027 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 123966 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 123905 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 123844 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 123783 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 123722 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 123661 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 123600 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 123539 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 123478 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 123417 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 123356 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 123295 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 123234 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 123173 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 123112 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 123051 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 122990 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 122929 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 122867 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 122806 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 122745 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 122683 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 122622 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 122561 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 122500 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 122439 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 122377 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 122316 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 122254 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 122193 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 122131 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 122070 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 122009 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 121948 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 121887 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 121826 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 121765 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 121704 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 121643 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 121582 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 121520 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 121459 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 121398 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 121337 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 121276 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 121215 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 150 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //