Array 1 30933-27854 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUC01000009.1 Vibrio cholerae strain CRA_S17 NODE_9_length_170362_cov_41.5781, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30932 28 100.0 33 ............................ CAAAAAGCCTCTGTTATGCCTTCTGATTTTTTG 30871 28 100.0 33 ............................ CAGAGCGTCAGGTCATCCGCAGTTTTGCAAACC 30810 28 100.0 33 ............................ TGAGAATACGCCTAGCGATACAATGTACCGTAT 30749 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 30688 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 30627 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 30566 28 100.0 33 ............................ CAGTTACCTGACCAGCAAACAAAGCTTCAGCAG 30505 28 100.0 33 ............................ CGCTTTGCTATAAGCGCGGCATACTTTACCCCG 30444 28 100.0 33 ............................ CCATCCTTTCAGCAAGGGTGAGAAGGCTTGCAA 30383 28 100.0 33 ............................ TGCCTATTGTGTATCGGTCCTGACCGCTTTGAT 30322 28 100.0 33 ............................ CAGGCGAAACGTCTCTCGCACGTAAATCAGGTC 30261 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 30200 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 30139 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 30078 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 30017 28 100.0 33 ............................ TCAATTTTCAGTGCAGAGTTTGCAGCCGGAATG 29956 28 100.0 33 ............................ TAAAGCTCTTTATACTCGCCTTGTCCAAACATC 29895 28 100.0 33 ............................ TAAAGCCAAGCTCTAACGCTTCTGAGGCTGTCA 29834 28 100.0 33 ............................ CAACTCACGCGCAGACTATGACGACATACACAG 29773 28 100.0 33 ............................ TTGACTTGGCCGTGAAATCACCAGAACTACCGA 29712 28 100.0 33 ............................ CAGACTCTTTTTTATCGCTAATACCAACTGGTG 29651 28 100.0 33 ............................ TCTATCACCAATAGTTTCAGTCTCTTTTACTAT 29590 28 100.0 33 ............................ TAAAAGAAGGGCTTCAGTAGATGGGCTTTCAGC 29529 28 100.0 33 ............................ CACTGTACTGTCCAACGTGCCCAGTGTAGCGGT 29468 28 100.0 33 ............................ TTGAGATAGAAAAATCAATATGACGCGCAGCAG 29407 28 100.0 33 ............................ TTGGCTGTTTGAGTGTGAGGATATACTTGTCAT 29346 28 100.0 33 ............................ TACGTTTTGGTGCAACCGATTTAAAGCTATCTT 29285 28 100.0 33 ............................ CAGAATTCACAATGTTTTTGCGCTCATCAGGCG 29224 28 100.0 33 ............................ CAACTCGCCTTTTTTCACGATGCCATCATAACT 29163 28 100.0 33 ............................ CAAGTCGCTCTTTACACTCGATGCAGTGACGCG 29102 28 100.0 33 ............................ TTCTACGCCTTGGAGCCGAAAAATTCAGAGAGC 29041 28 100.0 33 ............................ CCAAACCAAGCAAGTTTGGAAGCCTGATACACT 28980 28 100.0 33 ............................ CAAAACCAATGCTAAACTATACCAATAAACATT 28919 28 100.0 33 ............................ CACACAAAACCGTGATACACTTCACATAACGAA 28858 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 28797 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 28736 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 28675 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 28614 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 28553 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 28492 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 28431 28 100.0 33 ............................ TAAAAACATTGATGCTTGCAGGATGGCTTTTCA 28370 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 28309 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 28248 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 28187 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 28126 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 28065 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 28004 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 27943 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [27922] 27881 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.4 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //