Array 1 2654-3162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDB01000278.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2654 47 95.7 30 ...A......A.................................... TTTATTGGATGTGGAAAACATACAGGGGTT 2731 47 100.0 30 ............................................... TCTCCTTTTCAAAGCCTTCTTTCATTCCGT 2808 47 100.0 30 ............................................... ATATTTCCGGAGATCCATATCCTCAAATTT 2885 47 100.0 30 ............................................... GCTTCAGGGCTTCCGTATCTCTAAAGAAAT 2962 47 100.0 30 ............................................... TAGCTCCTTGCAGGTTGGAAACACTTCCGC 3039 47 100.0 30 ............................................... TTCCCGGACGTATCGACGAACGAAAGAGAA 3116 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 99.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCCAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATATGAAGAGAAGAAACAAGAGGAGAAAAAGGGTTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTAAATTAGAAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGTGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 24530-23213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDB01000186.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 24529 29 100.0 34 ............................. TGGAAGACTATCTTAATAGTTTCATTGATACCTA 24466 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 24402 29 100.0 37 ............................. AAAGTATTCAAAGTAGTTCTGGAACTCCGGGATATAA 24336 29 100.0 35 ............................. TGCAGAAAAGCTGTTCTTTAGTTTATTTATACACT 24272 29 100.0 37 ............................. TACAGGGGTTGACCGTTGTTGCACACCCGTTTGCTGA 24206 29 100.0 36 ............................. TAAGGTACGATTAATTCTTTGCAACGACACAAAGGT 24141 29 100.0 34 ............................. ATAGTTGTTCTTTTGTAAAATGTTTCATTATTGT 24078 29 96.6 36 .....................T....... TTTCATTATCCTTTGATGAACTTTTTGATTTTCACT 24013 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 23948 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 23885 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 23822 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 23756 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 23691 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 23628 29 100.0 36 ............................. TGTATACATATAGAACATAATAATGCTTGTATCCGC 23563 29 100.0 34 ............................. CTGAGTATTTCGACTTGTATTTCTTTGAATTCCA 23500 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 23437 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 23372 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCTG 23308 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 23242 29 93.1 0 .........................G.C. | A [23218] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.3 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACGTTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCATGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //