Array 1 959-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQW010000257.1 Phormidium pseudopriestleyi FRX01 c_000000065928, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 958 35 100.0 35 ................................... CCGCCGGAAGGTGGGAGAGAGGAAATGATCCGAAA 888 35 100.0 34 ................................... TTCCGCAGGATAGCCAAAAACCTTCTACGTGCTG 819 35 100.0 35 ................................... TTTACCTCAACCGCAAAAAGTGAGGCGATTAGAAG 749 35 100.0 35 ................................... AACGCCATCATAACCTAACTCTTCGTACACAGCGT 679 35 100.0 36 ................................... CTTCCTGAAGTCCTTCAGAGGTCTCAACTGTAAAAG 608 35 100.0 35 ................................... CATCATCCATTGTTGACATAAGCAACTTATAGCAT 538 35 100.0 36 ................................... TTTTTAAGTTCTCCATCTCCATTCGTATCTTCCCAC 467 35 100.0 35 ................................... TTCAAAAACTTTAGCGTTGGTTTCTGCCAACTTGG 397 35 100.0 39 ................................... CATTATGAATAATCTGCCCAGCAATCAGCTTCATCCCGA 323 35 100.0 34 ................................... TGCAGTGTTATTGGGTAAAACTATAGCACCATTT 254 35 100.0 37 ................................... ACGGATGGTAGAATTACATCGTCGCCGACAACTTGTA 182 35 100.0 40 ................................... GTTCCTGTGTTAGATAACACACCAGCACGAGTGCGGACCT 107 35 100.0 36 ................................... CTTCTGCAGGGCAGACTGTTCCGCATGGGAAGTTAA 36 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 14 35 100.0 36 CCTTGCACTTCTTTGGAAGTGGAACTAATGGAAAC # Left flank : TCGGGTAAAATCGATAAGTTGGTTGTGACTTCTTTGCTCAATGACTTAGGCAAATTTGACTCGGAGTTGTTTTCCCGAATCATTCGCGAAGATTGGGTCAGGGATGATAAAATATTACCTGTGGCTAATCAACAAGCCTTCGTGGTGGCGATCGCCAACAATCAAGGTAAAATGTCACCGTTACTCGACCGCCTGCTAGAGGACCCACAGGTTGCCGATGAAACCAAAACTCGCATCCTTCGCGATCGGAACCTTTAATGCCATAAATATTAACTTAGCTTATCATAAACCTACAAATGATAAGCATCTGAGGGGGGTAGGCAACTGCTGGAACCCGCATTCTTTCGTTACCCCCCTCAGATAAGGCTCTAGGACCGGGTTTCAGGGGGCCATTTATTCCCACTTTGGACTCAAATCATTTAACTGTCGCTACAAAAACTTGACCCCCTCAGATTTAGGGGTGTACAATCATCTCAGAGTAAGCCTTTCAACAGGTAAGC # Right flank : CG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTGCACTTCTTTGGAAGTGGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 7734-8418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQW010000257.1 Phormidium pseudopriestleyi FRX01 c_000000065928, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 7734 35 100.0 34 ................................... TATTCTTCGTGGTCTGGGATCACAAAGATTATTA 7803 35 100.0 37 ................................... AAGTGCTGGGAATATGCCCACGCTTACCACAATTTGT 7875 35 100.0 37 ................................... CTTCTTTTTCTTCTTTTTTATCAGAAGAAGGGTTAAG 7947 35 100.0 40 ................................... GCTTCGAGGGACGAGGCCCCGAATCCTAGCAGTCCGAGGT 8022 35 100.0 39 ................................... GAGCGGCACGCATCATTTCGTGCCATGGACCCCATTCGG 8096 35 100.0 38 ................................... AAGGTGCTTCTTGACTGAACGGAATGTTCAGTTCAACT 8169 35 100.0 36 ................................... CGCATATTTGCGAGCATAGGGTAACGGTAACACAGG 8240 35 100.0 37 ................................... ATCCCCCCGGTGTTCCAGAGAGAAATGATCTCTCCCC 8312 35 100.0 37 ................................... TCACCTCAATTCCGTACACGACAGTTTCAAAAACTTT 8384 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 100.0 38 CCTTGCACTTCTTCGGAAGTGGAATTAATGGAAAG # Left flank : TTCTGCTCCGACAGTTGTGCCAGAGGAGGGCAATTGTCTCGAATCAATCATCATTTAGCCGGGTTGATTGATGAAGGATTTATCTGCATCTCCTCTCGCAATAAACGGAGTAAATCTCATTACCAAATTACTTCAACTAAGGGGAAAAGAATGTTAAAATATCTACAAGCGACTCAACTTGATGGCGAGTATTAAACAGCCCTGGGATAGTCCCAGTCCCGTCCTTTCTGAGACATCCCATCTGTGCCATCCCAGGGGTTGATAAATGATTATCTTAGCTTATCATTAGCATCTGAATGATAAGCATCTGAGGGGGGTAGGGTAGGTCTGAAACCCTTATTCTGCCGTTACCCCCCTCAGATAGCCCTCCACCCGGGCATTTGAGACAACGATTTTGCGTAATTTGAGGCGAAAATAAAGCAAATGTTGCTACAAAAACTTGACCCCCTCAGATTGATAGGTGTAGAATTAGCTCAGGACAAGCCTTTCAACAGGTAAGC # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTGCACTTCTTCGGAAGTGGAATTAATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 53-676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQW010000360.1 Phormidium pseudopriestleyi FRX01 c_000000160412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 53 37 100.0 37 ..................................... CCGTCAAGCGCCATTCGGTACAGCGAAAATCCCACCG 127 37 100.0 38 ..................................... TATAGAAGCCTCTAAAACCCCCAGAAAAACGAGAGTTC 202 37 100.0 38 ..................................... CAAGGAATAAACGGCTCAAACCCTTACATAGTCGGTAC 277 37 100.0 34 ..................................... ACAGCTTGACCTTACCTAAATACGGGTGCGTGAG 348 37 100.0 35 ..................................... ATACCTAGGGGCGTCGCACTGATGCAAAATTGATG 420 37 100.0 39 ..................................... CTAGCTGCATATTTCCCAGAAAAACGAGAGTTCCCTCTG 496 37 100.0 35 ..................................... TCATCCCCAAAAAAGTTAATAAATCATGACAGAGC 568 37 100.0 35 ..................................... AAGAGTGTAGGAAAGCGTCTAAACAGTTGATGTAA 640 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 100.0 36 CTTTCATTACAATGAATCCCGGCAACGGGATTGAAAC # Left flank : CCGCCAAAACCCGCCACCAAATCCTCCTGGACTCTAACTCTCGGCGATCGGTC # Right flank : CTTGCTTAGGTTGAATCAATGTCCCAAGATTAGTGATAATTTTTAAGTCCACAAATCTTGGTCATAAGCATTAAAAATTAATCATTAATCTTAGGTTTTAACTATCAATAATTTCTATAAAATTAGGGAGTAATACCGCAGCAAAATTAGCCAAAGAGTGACGATTTCAGTGGTTACTTTTAGCCGCAGATAACGACTGAGATTATTATAAACTTAGTCTAAATTGACTAGGTTTAACTTGTTTTTTTGCTCTTTCATCTCAACGATGAGTTGAAGTTTTTTCATGAATTCATCGGTTAACTGCGAAAAGGCTTTTGCTCCAATGGAGGTGGGATGAGTGAGTAAAACGGGGAGGAAGCTATCCACAGCTTTAGAAACATTGACATCCATTGGAATTCTGGTTTTAAAAATTTTGGTCTCTCCAAAATCCTCATGGACCCGGCGCATGACTTGGCGATAATATTTACCCGTGAGCAAATTACCAGACATGGTAAAGACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATTACAATGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 2285-2845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQW010000620.1 Phormidium pseudopriestleyi FRX01 c_000000168392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 2285 35 100.0 39 ................................... AACAACACCTGTATCTGTTTTTAGAACACAATTCATTGC 2359 35 100.0 36 ................................... CTCATCGGAAGGAGCTCCGTTCTCGGGCTTTGGGGG 2430 35 100.0 44 ................................... GTAACTCCGTGTTAAAAACACGGATCGGGTGGCTGGTCAGTGCG 2509 35 100.0 37 ................................... ACATTATTTTGTACATTACTTGTGATTTATATACAAT 2581 35 100.0 43 ................................... GATACCTTATCTATTTCATCAAGACGGATATGAATACCTACTT 2659 35 100.0 43 ................................... TAGAAATACATATCCTAGTTCTGGATAGTATTGAATTTCCTTT 2737 35 100.0 39 ................................... TTTTAGATAGGGGTAGAACGCATAGAGAATATCTAAGTT 2811 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 8 35 100.0 40 CTTACCGATTAGTTAAAATCGGACTTGTTGGAAAC # Left flank : AAGAAATGCAGAAACTGCATCAAAAAGTGCAACGGTTGGTTAAACCCACCGAGGATAATATCCGCTTGTATTGGATTAGCGAAACTGCCCTTTCTAAAACTCTAACCATCGGCAGCGAACTCCCGCAACCGCCCCCAGTTTCTACATTATCTAACCGTTCCCCCTCCGGCGTCGAGTCTTTCGGCCCTAATTACCCCCAGGTTAACCTCCTGGGGGTTTTTTGTTGCACCCTTCCCCTAGGAATGCTATGCTTCCAGCAAGGAAGAACACCTTTCCAAGATAAACAGCGGATTTGTAAAGTTTTATAAATCCGCAGAGGTCAGCCAAACCTCGAAACCCGCATTTTGTCGTTGACCTCTGCGGATCGAGGTCAGAGTCAGGGGTCCCAGCCATGAGTCGCGCGCTTATTCTCAATAAGTCGCTGCTTGTTGACAGGTAAAAACCCCCTATGCGGATCTGGTGTCTGAAACCCCCTCTCCGTCAGGCTTCCTGGCAGAGGA # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTACCGATTAGTTAAAATCGGACTTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 541-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQW010000203.1 Phormidium pseudopriestleyi FRX01 c_000000278858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 540 35 100.0 35 ................................... AGGATTTTCGTACATTATTGCCGCCCTGGTTGGGG 470 35 100.0 34 ................................... CATTACCAATGGTTCCGCCTCCTTCTGGGGATTT 401 35 100.0 39 ................................... ACTTGGATTCAGTTAATGCAATCCCAGCACTACAGCTGT 327 35 100.0 41 ................................... CTCTAACGGATCCGTACCCTCCTTAGGGGCAGACATGGTTC 251 35 100.0 36 ................................... TGTCGAAGCCCGCTGGCGCTGGCGACCCCTCCCACG 180 35 100.0 38 ................................... TCGGTCAAAACTCTAATGGTAGCTTAGTCTACCAGGAA 107 35 100.0 37 ................................... AGTGGGGGAGCATATTCCTCCCCTATCGATCGGTGTT 35 35 94.3 0 ..........A..C..................... | ========== ====== ====== ====== =================================== ========================================= ================== 8 35 99.3 37 GTTTCCATTAGTTTCACTTCCGAAGAAGTGCAAGG # Left flank : TCCTAAGTACCGACCGTCAGCATCCAGAAATAAGACAGGTAGAGAGTGCGAGAAGGCTAAGGCAGTGGCTTCTCCGGTGATTTCGCACCCGTGGAATAGGACGATATGGCTTGTCATTTTCGCCAAGACTCGCCGCTGCAATTGCTGATGATGCCATAGTTCAAAGACTTGTCGTTTGGCTTGGAGAATGGAGCCGGAATGGGTTAAGTAGATTGCGGTCATGGTTTCCATCGAACGCTACATTTCCAGCATCGCAACTGAGTATTTGCGTTCGTATATGCCTTAGTCGGTGCAGTATATGACTTTTTATATGACTTGCTGCCAAGATATTGCCGGTTGATAATTTGGGAGTCTGAGATAGGTTATGGCTTGACCCACCCTCCACTGGACCCACTGATACCTGCGATGTTAAGGCGATCGCTCCCATAGAAACTTCGATAACCCGTTGGGTCTGGATGCGATGCTAAAGCATCCACACACATTGGCGATCTGTTGGGTAA # Right flank : G # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAGTTTCACTTCCGAAGAAGTGCAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 13974-13553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQW010000203.1 Phormidium pseudopriestleyi FRX01 c_000000278858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 13973 36 100.0 40 .................................... TCGTTAGGGATTGAAATGAACATAGGGACAGAGAAATACT 13897 36 100.0 39 .................................... GTCGCGGCTCGTCGCGCGGAGGCACTCACGTCGGCTCCA 13822 36 100.0 46 .................................... ATTTCTGGGATAGTCACTAAGCAGTCTTTGTAAGTAGTCATGTTGG 13740 36 100.0 44 .................................... TCCGGATAGTTAGCTTTAATAAAGCCTAGATTAGTCAATCCGAA 13660 36 100.0 36 .................................... ATCTGGCATAACCCACTCTAATGTAGAGACATCAGT 13588 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.5 41 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : CGGCAGTACATGAATCCTGTCATGATTATATCCACTCAAGCAAGCCAATTGGCTAGATTATCGGGAGCTGGATGCGGGGAAACTCGCACGTCCAGTTCTAACAGGGAGGTGCGGGGTTTTATCGCCCCCATCGACCCTACCCTAGTCTACCTTGTCTTCCAACTTCGAGTAGTTTGACTG # Right flank : CGTTAAAACAAAGTCTTTAGTTGAAGTCTTATACGAATGGGAGAGGTGACTGTTGACAAAAGAGTAGGCTTCGAGTAATATAGTTTTTGGAGACACCTCTACCGCATAGAGCAATGTCCCCAGCCTGACGCTCTAGCAGCAAAGGTGTCCCCCAGCCCAAGGGTTAGGGCACAATTTTATTTCATGACCGATGATGACGAGGTCATTAAAACAAAGTCTTTAAGTTGAAGTCTTATACGAATGCGGAAATCGAATAAGGCTTCGACTCCCATGTAATTCGCAAAGAAAAACTTAAAAAGTTAGAGCTTTCGTAGCGATAAAAGCTCTACCTATTCAACTTTTGGTAAACTCCAAAGACACTCTTTTAAAACTCAAACTTGTGCAACAGGCTGACTCTCCCCACTCACTGGGGATATTAATTGAATTGAAATTTCAGTAGTATCGCCGCCAGTATGGGGTTACACTGGTTCAAATTCTCACCTGTTGGGGATACTAATTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //