Array 1 834-1521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRL01000071.1 Pseudomonas aeruginosa strain AZPAE14930 AZPAE14930_contig_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 834 28 100.0 32 ............................ AAGGTCTGGCATGGATTCCTCTCTTGCCCTGG 894 28 100.0 32 ............................ GAACGTGCTGCCGGTCTGGCGAGCGATACGCA 954 28 100.0 32 ............................ TTGGCCAGCAGCAACCCGAACTCATGGCAACT 1014 28 100.0 32 ............................ TGCGACGCCGCCGGAACGCGCGGAGCAGATCG 1074 28 100.0 32 ............................ AACAGGTCGAGTGGTATGGCCGGAAGCTGGAC 1134 28 96.4 32 ............A............... GATCTGGGGCGGCATCATCACCGCAGAATCTA 1194 28 100.0 32 ............................ TGGGCGATCGAGCACGGCATCACGCGCGAGAC 1254 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 1314 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 1374 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 1434 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 1494 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11274-10046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRL01000071.1 Pseudomonas aeruginosa strain AZPAE14930 AZPAE14930_contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11273 28 100.0 32 ............................ TACAGGTGCTTTTCAATGGCTGATGTACGACC 11213 28 100.0 32 ............................ GTCAGCTGTGCTGTGCGGATTGGGTACAAGCG 11153 28 100.0 32 ............................ ATGTAGCCCAGCCTCAATCGGCAGATCGCCAA 11093 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 11033 28 100.0 32 ............................ ATAGGGCCGAATGAAGTTGATGTGCTTGCCGA 10973 28 100.0 32 ............................ GCGAGGGCGTCGACGCACGCGACCGCGGCGAA 10913 28 100.0 32 ............................ AAGAACGGCTTCAGGCTGAAGCTAGATGCCTG 10853 28 100.0 32 ............................ ACGCTCGGGCCGGCCGCCAGCGGCAGCTCGGC 10793 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 10733 28 100.0 32 ............................ TCAACGACAAGGAGCTGCTATCCATTCTCGAC 10673 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 10613 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 10553 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 10493 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 10433 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 10373 28 100.0 32 ............................ GTAGTGCCGCCAGCACAGCGCCTCGACGGTGT 10313 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 10253 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 10193 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 10133 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10073 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //