Array 1 212322-210113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBM010000004.1 Salmonella enterica subsp. enterica serovar Reading strain HA7-LA4 YZU1237_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 212321 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 212260 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 212199 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 212138 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 212077 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 212016 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 211955 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 211894 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 211833 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 211772 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 211711 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 211650 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 211589 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 211528 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 211466 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 211405 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 211344 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 211282 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 211221 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 211160 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 211099 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 211038 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 210977 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 210915 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 210813 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 210752 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 210691 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 210630 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 210569 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 210508 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 210447 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 210386 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 210325 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 210264 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 210203 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 210142 29 96.6 0 ............T................ | A [210115] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230320-228583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBM010000004.1 Salmonella enterica subsp. enterica serovar Reading strain HA7-LA4 YZU1237_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230319 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 230258 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 230197 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 230136 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 230075 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 230014 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 229953 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 229892 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 229831 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 229770 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 229709 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 229648 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 229587 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 229526 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 229465 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 229404 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 229343 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 229282 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 229221 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 229160 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 229099 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 229037 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 228976 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 228915 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 228854 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 228793 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 228732 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 228671 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228610 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //