Array 1 22234-22079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCU01000009.1 Streptomyces flaveus strain NRRL WC-3505 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 22233 33 90.9 28 ........................C......GT GCAGCACGATCCTGGGGCGCAAGGCCTG 22172 33 100.0 28 ................................. GCCGGCTGAGGCCGCCGGATCCGATCCC 22111 33 87.9 0 ...........................GAG..A | ========== ====== ====== ====== ================================= ============================ ================== 3 33 92.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCG # Left flank : TCCGCCCGCGGTCGGTGGCATAGGCGAGGAAGACACCGACCTGGCAGTTCTCCGTCCGCCCGGCGGTGCCGGAGTACTGCCGTTGCACCCCGGCCGACCGTGTCCCCTTCTTCAAGAAGCCGGTGTCGTCCACGACAAGGACGGCGTCGGGGTCGCCGAGGTTGTCGACCACATACTGGCGCACATCGTCGAGGACCTCGTCGGCGTCCCACTCGATCCGGTTCAGCATCCGGTGGATGCGATCCGGGCCTGCGTGGCCGGCTTCCTCCGCCAGTGTCCAGCCGTTCTTCCGCTGCAGCGGAGCGATCAGGCCCCGCATATAGGCCAGGGCCGACTCCCTGGGCTCCGACCTGCTGAAACGGTGCACGAACCGCCCATGCAGGGATTCCAGTTCACCCGCCCACAACCTGACATCAGCAAGGTCCCCACCCATAACAACACCAACGACCGACCTGGCCATCAGTTACGGCAAGCACCGTTGCAGTACTAGCCCTTGTTCC # Right flank : GGTGCCGGGCATGCGGCCCTGCTGGCGCGGCCAGCTGGCCGATGGGCCACAGGTGTCCGTCAACCGATGCGCTGGGACACGCCACATCAGGGCGGTGATCCCCGCGGCCGGCAGGTGATGCCGGTAGGCGTTCGCCTTGTGATCGCTTCTCGCTCATGGTGGCGTCTGACCGCCACCGCCGTGCTGTCCCTGTCCCTGGCCACGCCGCTCGCGGCGTGGCCCGCCACCGCCGCACCGCCGGCGGCCGCCCATCATCCGGCTACCGCGTCAGCGGTGCGGCGGGACCTGCCCGAGCCGCCGCCGGCCGAGGTCGTCCGCAAGGAACTGGACGACCTCACCGTCGCGGACCCGCATCCGATGACCGGGTACTCGCGTTCGAAGTTCCCGCACTGGGTCACCCAGTACGGCACCTGCGACACCCGCGAGGTCGTCCTCGCCCGCGACGGCCAGGACGTCGTCAGGGACGAGCAGTGCCGGGCCGTCTCCGGCATCTGGTACAG # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 112950-112571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCU01000009.1 Streptomyces flaveus strain NRRL WC-3505 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112949 29 100.0 31 ............................. CTCCAGTCCAGCTTCAAGAACCTGACCCCGA 112889 29 96.6 32 ........T.................... GAGTGGCCGGTCAGCTTCGAGGGCCTCACCAG 112828 29 96.6 32 ....C........................ CCCGGCATGTCGGAGGAGCTGGCCGGCCGGAT 112767 29 96.6 29 .................C........... CACCCACCACCCGGCGGGACGCCGGGACC 112709 29 96.6 20 ....................A........ GGCACCTCGGCTGCCTTGAC Deletion [112661] 112660 28 82.8 33 C.......-..A........C.......T TAAGGCGGGTTCGACGTCCAACGATCCGGCGCA 112599 29 86.2 0 .............CC........A.C... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 93.6 30 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTGCCCGCCCTGAGAGAGGCCCTGCGAACAGCGATGGATCGCCGCACCTTCTCCACGATCTCCGGCGCCACCCTGTCCGCGCTCGCCGCGGACTGGGCCGCCGGCCCCACGAGCGCGCTCGCCCAGGCCCGCGACGGCAAACCAGTCGGCGAGGACTTCGTCGCCTTCCTGGAGGACAGCACTCAGCACCTCACTCATCACGCCACCGAGCGACCGCAGCACACCGCCACGCTGTTGGAGGCCCACCTCGCCACGGTGACCGAACTCCTCGAAAACGGCCGCTACACACCCGCCCTCGCCCTACGCCTGCACACCCTGGCGGCCTTCCTGTCCCAGACCACCGCCTGGCATCGCTTCGACCAGGGCCACCACACCCACGCCAGCCAGAACTGGATCGCCGCCCTGCACAACGCCCACGCCGCCGGAGACCACGACATGGGCGCCAGCCTCCTGGGCGACCTCGCCTACCAAGCCGCCTGGGAGAATGCAGGTCAGTAAGT # Right flank : GTCGTCGGCACTGCCAAAGAGCTGCGTGAGGGGTGCTCTCCGCGTTGGCCCGTCGGTAACGGGCGCGGATGAAGTCGGCGCAGCCGTCATGCCTGAGCGCCGGGCCCAGCCTGGGGGGCTGACCGTACGGAGAGCCGAACCGGAGTCGGCTTCCGATTTGGTCCGCTCGGGTACGCCGGACGACTTGGACAGCGCGAACTAGTGGTTGTACTAGTGCACACTTCCGTAATCTGGTGTGCATGACGGAGACGACGTATTCGATCGTGGAGGCCCGCGCCCGCTTGGGCGCGATCGCCCGCGAGGTCAGTGCCACCCGTGAGCCGGTCGCTATCACCGACCATGGCCAGACCGTGGCGATACTGGTCAGCCCCGCCGATGCCCTGGAGCTGCAGGAGCTGCGGGCGCTGGCTGCCTACCGTGCCCGCCAGGCCCGTGGCGAGGACGCCGGCGTCTCCCACGCTGAGGCTTACCGGCGCGTGTTCGGCGGTACTGAGGCGTGA # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:-0.15, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //