Array 1 8326-7276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMC010000020.1 Enterococcus alcedinis strain DSM 107709 Ga0454162_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 8325 33 100.0 37 ................................. CGTGGATTAGTTGAAGAGGGACGTAATCGCATGACAA 8255 33 100.0 34 ................................. ATCTAAATGAAGCAGCGAAGAAACAAAGTTATCC 8188 33 100.0 35 ................................. CGAATCCCAGAGGAGCAAATGGCGAATGCATTTAA 8120 33 100.0 35 ................................. AGATCCAAAAGAGTTCGATGCGATTATCAAGGTGA 8052 33 100.0 34 ................................. GTTGTAGAAAAGTTATTAAAATCTTTGCGATGCA 7985 33 100.0 34 ................................. ACTACAGGGGGTAACACGTTTGCGAATTAGTATA 7918 33 100.0 33 ................................. TTTTTTACGGCAATGACACATCGATTTATGACC 7852 33 100.0 34 ................................. GAAGAGATCATGCGCGAACAAATTTTTCATATTT 7785 33 100.0 34 ................................. AATGAAATTGATGAAGCGATCGATACAATCATCG 7718 33 100.0 34 ................................. AATCAAAATTTTCTCTTCCGTTAACTCTGAAATT 7651 33 100.0 36 ................................. AATGTTTAAAGCACCCAAGTTTACCAATGATGAATC 7582 33 100.0 36 ................................. AACCCCATTAACTTCTCTTTAGAAGCAGTTAGCTTT 7513 33 100.0 34 ................................. GATGATACCCTTAGCGATAGCATCTAAGTTTTTA 7446 33 100.0 36 ................................. TGAAACCACATAAGTTCCATCTGGTTCATAGTGCCC 7377 33 100.0 36 ................................. GCTGAAGTTCCAGAAGGCGTTGTAGAAGCGACTATC 7308 33 93.9 0 .....................A..A........ | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 99.6 35 GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Left flank : CGAACAACCATCATTATTTGCTTTACTTGTTTAAGTATTATAAATGGAAGTATTTACTTTTAAAATAGATACTTCCGTTTTTACGTTAAGAAAGTATAAAAGATAGAGCGGTAGAAAGACTGAATTGACAGTCAATCTATCGCTTTTCATTTGATTTGAAAATAAAGCTATGAAAATGAATATTCTTTGCCCGTTTACAGGTATCGTATCATTTTTCTCATAAGATTTACTCGTTTTGAAAGAGTATATCGTTAGCTAATGCTTAATTATTTTGTGGTATACTAGATGTGTAAATAACTCTTGTGGCAGTAATATGTATCTAGTGCGAATGGTAAGTGAACAGCCAAATACTGGCTCCTTCGCACCCTGTTTGCGGTGTTAAATGAAAAAATGATGATAAAATAAAGTATGGATTGATTGTTACAACCTCTTAAATAATCAATCCAGGCGATTTTCATTGAAAATACACGGATTTATTTGAATTATTCGTGTAAATCGCC # Right flank : TTTAGGTAACATCATGGAGTTAATTGTTCAGCTGGACAATGATTGATATCGGTATGAATTTTGGCGCCAACTAATCTTTAAGGTAAAAAAAACCACCAATCCATCAATTGGTGGTTTTTTAGGTTGTTTTTCTAATTTTTTTATCTAAAAAACCAATCAAACAACGCTTGGTTTGGTCTATAAATGAGGGCTATGTTATAATCAAGTCAGATGACGAAGGTTGGTGAGGGCGATGCAAATTCGATATCAAAAGGCGCAACAAGAAACGCTTGTAACTTATGGCGAAATCTTGTCAACGAGTATTCGAGAAGATTGGCTGAAAGACAAACATCTAATTATTTTAACGAATCAACGTTACTATGACCGTTTTTTTGAAAAGATTGAACAATTATTTTTAAATCATCCAGTTGACTGGTATATCTTTCGAAATCAATTGTACGTCAATACATTAGAAGAATGGTCGGGGTTACTGACTTATTTAGATCGCTTTTCAACGGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 17107-20531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMC010000018.1 Enterococcus alcedinis strain DSM 107709 Ga0454162_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 17107 33 100.0 36 ................................. CAGTTGCAGTAGGTGCTGGTGTCGGTGTGATGGCTG 17176 33 100.0 36 ................................. AGATAGCGCTAGCGACAGTGACGCTCAAAATAGCAG 17245 33 100.0 37 ................................. GCGTGTTTTAGGTATCATTGGCAAAGGATTAGAGAGC 17315 33 100.0 35 ................................. ACTGAAGGAGACCGAGAAGATATCAGTATTATTAA 17383 33 100.0 34 ................................. CCACAGTCCATCAGTTTACCGCTAGCCAAGTTAA 17450 33 100.0 36 ................................. TTTTTATTTTGTCTCATCGAGGAACATTGTGTCTCA 17519 33 100.0 34 ................................. AAAGAGGGCGAAATCGTTCGAGTTTATACCGAAA 17586 33 100.0 35 ................................. CTGCAAAAGAAGCACCTCTTTTGCCAAGAAAATCA 17654 33 100.0 37 ................................. AATTTTTTGAATGTGACTCTAGGTCACATTTGTCTAT 17724 33 100.0 37 ................................. TGCGTTTAATACGCTTGCTGAAGAAGATGATAGTTAT 17794 33 100.0 35 ................................. TTTGACGGGTACGCATACGTTAGCAAAAGATGCTG 17862 33 100.0 33 ................................. TTCGGTAATTAGTTCATCATAAGTCTTAACAGC 17928 33 100.0 35 ................................. CTTCGATAGTTTTCCCGGTATACTCTACAACGTAT 17996 33 100.0 35 ................................. TATTCGTAAAGTCGAAAGATCATCATTTACTGAAG 18064 33 100.0 34 ................................. GTACTTTGGACCATTTTTCGGCGGTATCAAAACA 18131 33 100.0 34 ................................. CGAAAAAGGTGACTCGCTACGTCTGGATGATAGC 18198 33 100.0 36 ................................. ATTTTTCCTGAGGGATCATATATTACAGCGCTAGAA 18267 33 100.0 35 ................................. GGTTTAACTCTCTTTACAGGACGTCAAGGAGCCGG 18335 33 100.0 37 ................................. TTATAGATATAGTTTGTCTGGTGATGGCTTTAAGTTT 18405 33 100.0 35 ................................. CGTTAAGTTAATTACAGGAGATAAAGGCTTAGGTG 18473 33 100.0 34 ................................. AATCCGATAGCGCACAGCCAAGTAGATAATGTGC 18540 33 100.0 35 ................................. AAATTGATATTGTTTGTAGTCTGACACGTCCATAC 18608 33 100.0 34 ................................. AGCTATAGGGGGTAACACGTTTGCGAATTAGTAT 18675 33 100.0 35 ................................. CTTTCATCGGATGAGCTATCACTGGAAACTTTAGA 18743 33 100.0 35 ................................. CGGACACTGAGTTTAACGATGCCAATGATTTAATT 18811 33 100.0 34 ................................. TTACCGATCCGACAGGTAACACGCGCTACAAAGT 18878 33 100.0 36 ................................. CGTTACCTCCAATCTAAGACCGACGATGACCCCACC 18947 33 100.0 37 ................................. GGGACCGGTGAGTTTGCCGAAAACGGTCAAGGTCGCA 19017 33 100.0 34 ................................. TCAAAAATTATGCGTTACTTTGTGATTAGTTATT 19084 33 100.0 38 ................................. ATGGTGTGCCTGCCCGTGATCGACGATGCCAATTTTAA 19155 33 100.0 36 ................................. CTTTTTAGTTACGTAAGTCTCAATATCATGACCCTC 19224 33 100.0 35 ................................. GGGATTTGATTTAAATAACTTAACTACTACTGGTT 19292 33 100.0 34 ................................. TCTCTCAAATAATATTTATCGAAAGCACCTGGAC 19359 33 100.0 36 ................................. TGTGTAAGTTAGTCCTGCGCCTGAAGGATCGATAGG 19428 33 100.0 35 ................................. AATCATGTAATCACCACTTGTCACACCTTCTGTGA 19496 33 100.0 35 ................................. AGACGGGGACATCGAGTGCTGGGGGAGCAAGCGTG 19564 33 100.0 35 ................................. CCCATATCTACAATGCACCAGTTAAATTGCATTGC 19632 33 100.0 34 ................................. TCCTCCTTTAACACTGTGAACATGCTCTTGATAA 19699 33 100.0 35 ................................. ACAACCGTGTCTTCCTTGTATATATGCCAAACGTT 19767 33 100.0 34 ................................. AATTTAATGGCATTGTCACACCGATTTTAGGGAT 19834 33 100.0 35 ................................. AGCGAGAAAATGCCCTAGCTCATGCGCTAACTCAA 19902 33 100.0 34 ................................. TTAACGAGCTAAAGCTCTTAAATGAGCAATTAAA 19969 33 100.0 34 ................................. CCTCAAAGCTTTTGAAACGCGCGTAAACACCTGT 20036 33 100.0 36 ................................. AATATGCGTCATATGATAAAAGGAACGCCATTGGAT 20105 33 100.0 36 ................................. TCACATCACAATAAACAACAATAAAATAATTACAAC 20174 33 100.0 12 ................................. ATCATATTCAGT Deletion [20219] 20219 33 90.9 36 T...A.....A...................... AGCGCTCGCTCCTGAAGCGAGAAAGAAAGCTCGACA AGTGTTTAAC [20230] 20298 33 100.0 33 ................................. CTTTAGGGATAGTTAGGGATAGTAGAGAGTAAG 20364 33 100.0 33 ................................. AATTAGTGGTTTGCTTGCTTCCAGTCCGTCTCG 20430 33 100.0 34 ................................. TTACAACAGACAAATGGTTTATCACACATATGAA 20497 33 90.9 0 ..T....................CA........ | AC [20519] ========== ====== ====== ====== ================================= ====================================== ================== 51 33 99.6 35 GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Left flank : CCCTCCATTTTTGTGGAAGTAGGTGATGATCGATGTTAATATTAGTATCATATGATGTTGCTACTTCGACTGAGGGTGGAACAAAGAGATTACGAAAAGTAGCAAAAATTTGTCAAAATTATGGACAAAGAGTTCAGAATTCCGTTTTTGAGTGTATTGTAGATTCTACACAATATGAAGTAATGAAAAATGAATTAACCACCGTGATTAATAGTGAAGTTGATAGTTTAAGATTTTATCGTTTAGGGAAAAACTATAAAAGTAAAGTTAAGCATATTGGAGCAAAACCATCAATTGATATCGAAGGAACATTAATTTTTTAAGTGCGAATGTGAAGTGAACACAAAATCACTAGTACATTCGCACCAAAATAAACAGTTAAGTTAAAATTAAATGAGGGAATTAAGTATAAAATGATTGTTTTTTCAAAAAAATAATCATTTTAGGCGATTTTCATTGAAAAGAAGGGAGTTTTAAATAAAATTCCACTCTGAATCGCC # Right flank : AACTTGGTTTAGTCATACGCTGGGGGAAATTCATCGTCTGTACACCAAAATTGAGATGAGAAAAAGGACATTATGAGATATGTTTTAGCGCCGTGTGGAACTTGAATGTCATCAAAACATATAGATCCAACTCCTACCGCCTCCATTGAGATCAATATTGATATGGAAAGGAATGAGAAGGGAAGAGACGTGCAGAGACGATTTTTTTATAACTCTTGAATTTACAATATAAGTGCAACACCAAAAGAGACTCATTGCTTCAAACCTAGTAAAATAGTGTTTACGACGACAACTATTGAAAGGATTGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //