Array 1 3831369-3830668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068591.1 Escherichia coli strain EF7-18-58 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3831368 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 3831307 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 3831246 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 3831185 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 3831124 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 3831063 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 3831002 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 3830941 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 3830880 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 3830818 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 3830757 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 3830696 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3848911-3846869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068591.1 Escherichia coli strain EF7-18-58 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3848910 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 3848849 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 3848788 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3848727 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 3848666 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 3848605 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 3848544 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3848483 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 3848422 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 3848361 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 3848300 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 3848239 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 3848178 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 3848117 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 3848056 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 3847995 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 3847934 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 3847873 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 3847812 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 3847751 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 3847690 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 3847629 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 3847568 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 3847507 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 3847446 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 3847385 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3847324 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 3847263 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 3847202 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3847141 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 3847080 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 3847019 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 3846958 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 3846897 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //