Array 1 18707-18407 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMAF01000024.1 Streptococcus equi subsp. zooepidemicus strain ISU36185 contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18706 36 100.0 30 .................................... TCAACAATAGCTAAATCAAAATGCTTATCA 18640 36 100.0 30 .................................... AGCTCAACGATGAAATCGCTCAAGCTATCT 18574 36 100.0 30 .................................... CGTGGCCCTCTTTTAAGCCCATCCACGCTA 18508 36 100.0 30 .................................... CAAAGGAGCTGTTATTCTAGATCCTTTTAT 18442 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGTTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGGAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTACTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 89928-87527 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMAF01000006.1 Streptococcus equi subsp. zooepidemicus strain ISU36185 contig006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 89927 26 100.0 42 .......................... ATTTCAGCCTTCTAACATCAAGGAGAAACCAATGATGTCTCG 89859 26 100.0 39 .......................... TCAATTAATTGTTGTAACTTTGACAATCTCTCAGTCTCG 89794 26 100.0 41 .......................... AAGAAAAAATTATCACACTAATACTAATGATTAAGGTCTCG 89727 26 100.0 39 .......................... TTTGGCGATTGGCGAGAGGACTACGAAATTATAGTCTCG 89662 26 100.0 40 .......................... CTGTTGAATTGCGATTTAAAGCAGAATTTATTGAGTCTCG 89596 26 100.0 39 .......................... AAATAGACTTGTTTCAAAACTTTTAATCATCTTGTCTCG 89531 26 100.0 41 .......................... GAAATTTTTGGCACAAGATCCTCTCTATAAACATCGTCTCG 89464 26 100.0 41 .......................... CAAGTTAGTAGTCGCTTGGTCGACATTCTCATTTGGTCTCG 89397 26 100.0 40 .......................... GCGAAGATAATATGCCAATTGAAGTTGTTAATCGGTCTCG 89331 26 100.0 41 .......................... GTCTATATTACTTAACTTATCTATATAACCACCTAGTCTCG 89264 26 100.0 39 .......................... AGCTACATAACGGTTAACAGCAGCCATAGCACAGTCTCG 89199 26 100.0 40 .......................... TAGTGGTTTTAGAGGTGTATCTAAGCATAAGAACGTCTCG 89133 26 100.0 39 .......................... TGTAGGTGAGCTATTTGATAGTATCAATAGCTTGTCTCG 89068 26 100.0 39 .......................... AAAAGTTCTAATAATTCTGGCTTTTTGAGTTTAGTCTCG 89003 26 100.0 40 .......................... ATCAGTGGTATAAGTCCCAGTCAGTCTGATATACGTCTCG 88937 26 100.0 40 .......................... ATAGCATCTGCATCTTCCCACTTAGGATCACCCAGTCTCG 88871 26 100.0 39 .......................... TTATGCAATCATCTGAAGGTAAGGCGGTTATTAGTCTCG 88806 26 100.0 40 .......................... TGGCTTTTATCTGGTCTGCATTATGTGACAATGAGTCTCG 88740 26 100.0 40 .......................... TGCGTTGTCAAAAGTGTTAAGAGGAGAGGTAACAGTCTCG 88674 26 100.0 40 .......................... ACTTTCATTAAGATAGGTCGTATCTGGTAAGTAAGTCTCG 88608 26 100.0 41 .......................... CCGTCAAAGATGTGCATCAGACCTGTACCGTCACCGTCTCG 88541 26 100.0 40 .......................... GGCTTTAAAGTGCCTATTGTCGTTGACCAAAACGGTCTCG 88475 26 100.0 40 .......................... TTATTATTGGCTTTGTCTATCAATAAAAAAGCTAGTCTCG 88409 26 76.9 41 ..TTTC.T.......C.......... AGGGATAGCTTTCTTAATCGCTCGATACTCATCTCGTCTCG 88342 26 76.9 40 ..TTTC.T.......C.......... TATGTTTAGTGTGAGGAAAATCATTATTGCATAGGTCTCG 88276 26 76.9 40 ..TTTC.T.......C.......... TGAATACTTGACTGTGACAAAACGCTATGGCTATGTCTCG 88210 26 76.9 39 ..TTTC.T.......C.......... AATAGCAGCTCGAATAGTTGAGCCACTTCCAGCGTCTCG 88145 26 76.9 40 ..TTTC.T.......C.......... CAGATCTTTGAGGGTTTGCTTGTCGTACTCAAAGGTCTCG 88079 26 76.9 40 ..TTTC.T.......C.......... ACGAGATAGGACGAAAAACAGCTTTAGAGTTGACGTCTCG 88013 26 76.9 39 ..TTTC.T.......C.......... TTGTAGAAGCACAACAAGGCACGTTGCAATTTAGTCTCG 87948 26 80.8 40 ..TTTC.T.................. AGAAATGAATGCTAAGGTAAACTCACTAAATAAGGTCTCG 87882 26 76.9 40 ..TTTC.T.......C.......... ACGAGATAGGACGAAAAACAGCTTTAGAGTTGACGTCTCG 87816 26 76.9 39 ..TTTC.T.......C.......... TTGTAGAAGCACAACAAGGCACGTTGCAATTTAGTCTCG 87751 26 80.8 40 ..TTTC.T.................. AGAAATGAATGCTAAGGTAAACTCACTAAATAAGGTCTCG 87685 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 87619 26 80.8 40 ..TTTC.T.................. ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 87553 26 80.8 0 ..TTTC.T.................. | T [87529] ========== ====== ====== ====== ========================== ========================================== ================== 37 26 91.7 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : GCGATACGTGCCTTTACGATGTTGCGACTCCGTCTCGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTAAGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTATTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGTTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGG # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //