Array 1 1177087-1176346 **** Predicted by CRISPRDetect 2.4 *** >NZ_QODC01000001.1 Listeria monocytogenes strain Lm96_84d_sm contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1177086 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 1177021 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 1176956 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 1176892 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 1176826 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 1176762 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 1176699 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 1176635 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 1176570 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 1176506 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 1176440 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [1176416] 1176374 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 338404-340421 **** Predicted by CRISPRDetect 2.4 *** >NZ_QODC01000003.1 Listeria monocytogenes strain Lm96_84d_sm contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 338404 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 338470 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 338536 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 338602 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 338668 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 338735 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 338801 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 338867 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 338933 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 338999 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 339065 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 339131 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 339197 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 339263 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 339329 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 339395 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 339461 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 339527 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 339593 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 339659 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 339725 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 339792 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 339858 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 339924 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 339990 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 340056 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 340122 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 340188 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 340254 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 340320 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 340386 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //