Array 1 65147-67756 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCUN01000011.1 Lacticaseibacillus casei strain N87 gLb87_seq11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 65147 36 100.0 30 .................................... TTACTATGTTTAAAGAAGAAAGCGAGATTT 65213 36 100.0 30 .................................... CGTTGGCATCATTGCCATGCTCATAGTAAG 65279 36 100.0 30 .................................... AGTACCCATAATTAGGAACAGTTGTCACAT 65345 36 100.0 30 .................................... GATGACATGAGCTTGGTGGTGGGTATGTAT 65411 36 100.0 30 .................................... CCGCAAGCGTGAATACGCTGACGACTCTCC 65477 36 100.0 30 .................................... ACGACAGAACAGACAGGTTCAATGCTTATT 65543 36 100.0 30 .................................... ACGTTTGACCATCTGCACATACATCCATTG 65609 36 100.0 30 .................................... AATATCAAAGGTGAAACGTGCGTGTTCACA 65675 36 100.0 30 .................................... AAGAAAAGCTAAATCTTAATACATCCAATA 65741 36 100.0 30 .................................... ATAGAATTAAATTGTATTGCTTAAACAGAT 65807 36 100.0 30 .................................... ATGGTCACATAGCCGTTGTTAGTGCCTTGG 65873 36 100.0 30 .................................... CCGTTGCGGATCCGGTTCTTTAATCTTAAA 65939 36 100.0 30 .................................... CCCGTAGGTTCGAATGATGATTTGCTTCTG 66005 36 100.0 30 .................................... TGTTGCCTATGGAGAGGGTTATGACCATGC 66071 36 100.0 30 .................................... GCCTGACTGGTCGATTAAGTTCGCCAGTCC 66137 36 100.0 30 .................................... AAAAGCAGAACCAAAAGAAGCAGACTTAGA 66203 36 100.0 30 .................................... CTCGAGTACTGGTTGAACCACCACGACGAT 66269 36 100.0 30 .................................... TAACTCGTTAGTTAGCACTTTGAATTGCCG 66335 36 100.0 30 .................................... GCGTGACGCCGAAAATATTAGCCGACATGT 66401 36 100.0 30 .................................... AGTAGCAAAGAGAATCTTGCCCACAATCTT 66467 36 100.0 30 .................................... AGCCGTTGTGTGTCGTGAGTTGGTAGCATG 66533 36 100.0 30 .................................... CGATGGCCGTGGGGGTTGCGATAAAACAGG 66599 36 100.0 30 .................................... TCATTGGCGTCTTATAATCGTGTGCTAAAA 66665 36 100.0 30 .................................... TAATGATGAAGCCTAGATTTGTCATTATTG 66731 36 100.0 30 .................................... TAACTACACAGATTTCGTTGACAGATTTAA 66797 36 100.0 30 .................................... GCTAGCGCCGAATCTTGGTCAACATTCTTC 66863 36 100.0 30 .................................... CGCCCTTAGCAAGCGCATTAACCAATGGTG 66929 36 100.0 30 .................................... GACGGGGAATCTTTTGAACCGTGATTGGCC 66995 36 100.0 31 .................................... AAAAGCCGACACTGACGCCATCAAAGACGTT 67062 36 100.0 30 .................................... CTATTGATTCCTATAGAATTGTCATTCGCG 67128 36 100.0 30 .................................... TCTGATAACGGTGACTGTTTTGCAAACCGC 67194 36 100.0 30 .................................... TGTCTAGCAAATGAACTGCTGGCCATGTGA 67260 36 100.0 30 .................................... AAGCGAATATAATAAGTTTAAAGTGATCTT 67326 36 97.2 30 .............................C...... AAAAACAGAATCAAAAGAACCAGATTTAGA 67392 36 97.2 30 .............................C...... CAAGGTGATGAGGAGGCTGAATAATGTCTC 67458 36 94.4 30 .............................C..G... TATTGTAGCCAATCGCACTTATACCCTGGA 67524 36 94.4 30 .............................C..G... ACGCAATATGCACATGCAGATTATCTGTGT 67590 36 91.7 30 .......T.....................C..G... ATGGATAATATGCCGGCGCTACCTCTTTAT 67656 36 88.9 28 .......T.....................C..G..T TTCGGTTTCCCCGTATCAGCAACACGGG 67720 35 80.6 0 A.........-..T.....C...........G..TT | C,C [67732,67749] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 98.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTAAAAAGC # Left flank : GAACTCGATTTGGACAAGTTGCTGCAACGTTGGATTTATAAAAAGGTTGCACAAATGATTGACGACCAGCGGCTGGTTGAATTAATCGATCAATCACAACATATGGCTATGGACTTGCTGAAAGACCCTCTTTTGAATGAACTTCCTCTCACAGTTGAGCCCGGTGGGAAGCTGGAACAAATCATGAAATATTGCAATCTCCATTTTGATGAAGGGGTGATTGTAGAGCCAGCCTCTAAAATTGAAGCAGTGATTCAAACCTTAGCAAAGCTTGAAGAAAAACGCCTTGTCATTTTGACTAATGTCAGTCATTATTTAGGTGTTAAGGAGTGGACACATTTAGTGGATCAGGTTAATGCTACTTCACTGGAGATGGTTCTCATTGAATTTTCAGATGTCGATCGAAAGAATTTCTTTGAAAACTGCCAGTATGTGTACATTGACAAAGACTTTATGGATAGTCGAGAGCTGATTGATTAAGAGGCCGTGTGAAAACACCG # Right flank : TCTTAAACAGGAGAGGCACGGTGGTCAAGTTTTATTAAATAAAATAGTATTGATAAAGGTGTTCATTAGCTATAATGCGGAATTAACAGGGCTATAATTTGCCAACGGCTGCGAATAGTCTTCGCGGCTTTTTGTTTTGCCAAGTAAAGGGTTCTGCCAATTGATAGTCAACCACCATATTCTTTAGCTGTTCACGTGTACAATAAGACACTGATAAACCGATTCGAGGTGACCTAACATACACTGGCTAAAAAAATATGTACGACCACTGGATTATGTCATTGTGGTCTTACTGTTCATTGCATGCTTCATTCCGCTGGGCATTTTTTCAATGAACGAAGCGCATGTGAATACGAATCAAAAAGTGGCAGTTATTTCGATTAATGGCCATGTCAAACGGCGCATTAAGCTGGATGCTCATGCGGGCCACCAGCAGTTTACGCTGTATCCGGCAAAAGGTCAGTATAATGTCATCGAGGTTGATGGCGCCCGCATTCGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTAAAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 273031-271609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCUN01000009.1 Lacticaseibacillus casei strain N87 gLb87_seq9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 273030 32 100.0 33 ................................ AGCTTAGGAGGTATAACTCATGCTAAATACAGT 272965 32 100.0 34 ................................ TACTTCCTGCCACTTGCTGCCGCGCGTTGCGCGT 272899 32 100.0 33 ................................ AAAGTTAATACGCCCAACGTAATCATCAATCGC 272834 32 100.0 33 ................................ AATATCCCTTTCGTGAGGTACTCGATCGGCACA 272769 32 100.0 38 ................................ AGGAATTCTCGCGCAAGCGCTCAACCGGCTATCGCCAT 272699 32 100.0 33 ................................ CAGTTCTGGTAGATAATTATAAGCTTAGCAAGG 272634 32 100.0 34 ................................ TGTTTACGTTGCTGTGTCACAAGCCCCAACAATT 272568 32 100.0 35 ................................ ATGCCATGGATGTTGGTCAACGCCTTCGGGCATAA 272501 32 100.0 35 ................................ AATGATGACGACCAAATTACAGCCATCGACCTTGT 272434 32 100.0 33 ................................ TCACCTCCTAGAAGCCAAAATCATCGCTGAAGA 272369 32 100.0 34 ................................ AGGCACTAGCAGCCGCGATGGCCAAACACTTTGA 272303 32 100.0 33 ................................ AAAAATAAGCCCTCCACCCACAATTCGTGAGCA 272238 32 96.9 34 ..................A............. TGCCATACCCTAACACAATTGAAAGTTACGCAAC 272172 32 100.0 34 ................................ CACACATGGATGCGTGCAAACCCATTAGCAGCCA 272106 32 100.0 33 ................................ AATTTTAATTTAGCATCTTGCATGCGTTCTGAA 272041 32 100.0 35 ................................ TTTGTTAGTCATCTTAGCCATGTCGCCGATATTTT 271974 32 100.0 35 ................................ ATGTACTGCGAAGAAAACAACGGCAAGCTGGTTCA 271907 32 100.0 36 ................................ GTTAACTTGTCGAAGGTACCCGTTAAGTCTGTCTTG 271839 32 100.0 34 ................................ CAATTTACTTTGCCGACATTGACGAAGACGAAGC 271773 32 100.0 35 ................................ CGCAACTAAAGGCACATCTGCGGATGGGCAAGGAG 271706 32 100.0 34 ................................ ACCCACTGCCTCCGGAATCACCGGCAAGTTATCT 271640 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 22 32 99.9 34 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : TATGTAAGTACATTGTCTTTCCAGGCTTGTTCAATATGAATAAGTGCCCATTGACGTTTGCAAAAAACGAAATGCTGAATGCCGGATATTAAAAGCCAATCCTTTTCTGAATAATACAATTGAGTCACCTCCAAAGCAGCTATTAAATTCACCTATGCTCATTATTTCACCTATCGTCTTTGATTACCAGCATAAGAAGTCAAAAATATAGCGCTTACAAGTTTGTGACCAAAAGCTTTTTCAAAATTTAGTTGATCATATCAGGCAGGCATTGAAGATACGTTAACGTACTATGGTATATTGTTATTGAAGAACAACATGTTTTCGACAATGAAGGTCTGAGTGCGAATGTAGGGCACACATGAAATCGCCGGTACATTCGCACTCCTGTTGTTAAGTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTGTTATGTGTTAGGAAACACATTATGTTGCG # Right flank : AGGATTGATTATAGCGGCAATTAAGTCGCAATCCTCATAATTACATGAGCTAAAATACGCCCTTTGAAGAAGCATATGGGGGTTAAATCATTCCAATTAAATGGGATGCGCAAAGCAAAATTATTGCTTGAAGCCTGCACTTTCTCCGCAAAAAAACCAGCATGAAACCCGACTGGAAGTCTGGCACATGCTGGCTTATTTGCTTGGAATGTCTGCTGAATTTACCTACAAATCCTTTCGCCATAAAGCTAAAACCGACAAGATAATAGCAGTCATCAAAGTTGTCTACAGCTCATATCGTTAATAGTTCATACAGTTAATTTCTTTAGATATCTTGCGATTTTTAATATAGTGTTAGTCTTTTTTCACCCATCCGTGACACTATGCGGCTTGCCCTCAACCCTGAGTACCTCTTCAACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCCGTAGCTTTTGCAACCCATCAAACGAAAAGCCAAGCCGTCGCATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 281937-284050 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCUN01000009.1 Lacticaseibacillus casei strain N87 gLb87_seq9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 281937 32 100.0 38 ................................ TAAAGTAATGAGAAGCATGCAGCGATGTAATGGTGTGC 282007 32 100.0 34 ................................ CACAAAAGATGAATAGTCAGCTTTGGCATCGACA 282073 32 100.0 35 ................................ AGCTAGATACTGCCACCAAAGCCAAGGCTTCACAG 282140 32 100.0 40 ................................ CGTCAAGGCAGAGGTATTGGTTTTAGCAAACGCAAAGGCG 282212 32 100.0 39 ................................ CGTCTTGCCAAGATCAATAATGATATTCTGCGTCACATG 282283 32 100.0 34 ................................ TTCGGTTGATTTAAAAGCTGATTTTGGAACTGAG 282349 32 100.0 37 ................................ GTTTATACAAATAATCGACCGGCGCAAAATCCGTTAG 282418 32 100.0 33 ................................ AGTTTATATTGATATTATACACTTTTCATCTGC 282483 32 100.0 36 ................................ ATGTTAACAACAACGTTATAGGAATCATACAATTTT 282551 32 100.0 34 ................................ CCAATTGAGGATCACCGAGGCTACCCAAAATGGT 282617 32 100.0 33 ................................ TTATAAGTCAATTGAAGCCATTATGAGCGTTTA 282682 32 100.0 36 ................................ ACTCAATTCAGCATCCTTCCAAGCATCAAAATCTAA 282750 32 100.0 35 ................................ TTGATTGCACAAAAATAAGCCCTCCACCCGCAATT 282817 32 100.0 37 ................................ TGAAAAGTGGAAAGAAAAAAATCGCGAACGCAATCGT 282886 32 100.0 37 ................................ TACTTCCTGCCACTTGCTGCCGCGCGTTGCGCGTGTC 282955 32 100.0 34 ................................ CACGTAGCAACAGCTCATAATCAGCAATTTAGTG 283021 32 100.0 37 ................................ GCGAACGCCAGGCGCAGGGAATTGCAATTGCTAAGCG 283090 32 100.0 36 ................................ CCGTACAATCAAGCGTCCAGCATTCCCCACAACAAC 283158 32 100.0 36 ................................ TGTAAGTTTTGACTTGAATCCTTCGGCAAAAGGTTC 283226 32 100.0 36 ................................ AAGTGACGCCTCCGAATCATCTGGATCCAATTGCCA 283294 32 100.0 34 ................................ AAGTATTTGCTTTGGCGTTAACTTTTCGCCACGT 283360 32 100.0 35 ................................ TTTTATTGGCGCAGGTGCCTGGCTAATTACCTCGC 283427 32 100.0 33 ................................ GGATAAGAACGCTGAGCAAGATTCGTCGCTTAA 283492 32 100.0 34 ................................ TTGATGTTCAACCCGGTTAGCAAACTGAACTGGG 283558 32 100.0 35 ................................ AAGAAAAGATTACCAATACAAAGGATCTGTCAGTG 283625 32 100.0 33 ................................ CGAAGCACAACCGTAAATGGCGCGATTTAATCT 283690 32 100.0 33 ................................ CAGAATCAAACTAACAAGTAGGAACTACTACAC 283755 32 100.0 33 ................................ ACGAACGTCATCAACAACCAGATACCCGTTATT 283820 32 100.0 34 ................................ AATATAGTCGTAGCAAGGAGGCAGGCAACAAGCC 283886 32 93.8 34 ............AT.................. TCGGAAGTATGTCGTACGGCGGCGCAAGCTGTAA 283952 32 100.0 35 ................................ TTGAACTCGCTGGCCTCTTCGTACCGGACAGCCAA 284019 32 90.6 0 A..................T...........C | ========== ====== ====== ====== ================================ ======================================== ================== 32 32 99.5 35 GTCGCAGTCCACGCGACTGCGTGAATTGAAAT # Left flank : TCTACCAGCTATTAAAACAGGCTCAACAGTACGTCGTCCAAGTATTTGGTGATCAACATACTGAAGAAAACTTGCTTAAAAACGGTGTTGCACGGTTCGATGAGCGTTCGGGCTTATGGATTGCCAGAGAGAATCACTATGACGAAGAATTTGGATTGGATACTACTGACAAGGCGATGAACTATTTTGTGTGATTGACGATCTCAAGTTGGGATTTCGATAACTTGATTTGTTGTCGAAGTCTCAGGGACAGTGTAATCTGAAGTGAGCATTGCTCAGTTGAAAACTGCTTTCTAGTCATAAGACGATTTTTAGCATCACTTTTTGTAATATCTATCCTTGGTGCGAATGTGGGGCAAACATAAAAACCCGAGGAGATTCGCACCAGATTTAGATCTGAAAGTACCGTGTTGACATTTTATCTAGGCTTTTTGATAGTTATAGTTAAGCACCAGCCGCAAGATGTTGTGATCTTTAGGTTTTTTATGCAATATCTTGCG # Right flank : CCTCTTGTGCTCTTAAAGTTGGTGAAACACAATTTTTTTAGTCCACATGGTTACATGAATTACAACTCGCGACAGTCTGAACCAAAGCAACGTTGCAGTTAAGCGTTTTGATAGCATCTGTATCGTGACCCTCGTAATTGAGTGACTCGAGAATAAAAGCGATAGTACTCAGTAACTGTGGCTATAACAAAATGGCCTCTTTCCAATAACCGGGAAAAGGCCACTTTATTATAGTGAACATTAAATTACAGATCTCGACCATGATCAACATCTGTAAAGCAACAATCTCACAGGAAAATACGCTGTTCATTCATGCACTTTGACAGTTTGATGATCTTGAAAATATGAGTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAACCATCGTTTGCCTCAACGACTAAAGTACGATTATCTGCTGTAACACCAATATCAATGGAACACGCGCTTGGAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGCGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //