Array 1 540987-542475 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJA01000003.1 Listeria monocytogenes strain FSL L7-0479 NODE_3_length_547834_cov_20.216939, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 540987 36 100.0 30 .................................... TGAGGTTTGGTACTTTACGGGTGACGAAAA 541053 36 100.0 30 .................................... TATCGCTCATGGTGCCACCTTTTAACATAC 541119 36 100.0 30 .................................... TGCCAACGAATGCCCCATTTTTCTGCTTCC 541185 36 100.0 30 .................................... CGACGGTCAACTTGCCAAGTTAATTAGAGA 541251 36 100.0 30 .................................... ACTTGATGAAAGAGTAATTAAAGTCTTGCA 541317 36 100.0 30 .................................... ACGTTCCATACCAAACTCTTTCAAAACGGA 541383 36 100.0 30 .................................... TTACACATCTGGACGACAGGTTGTTTTCAA 541449 36 100.0 30 .................................... TAACATTTTATTGCAAGATTGGTTATCAAT 541515 36 100.0 30 .................................... ACAAAACATACATATTAATCACTTCTAATT 541581 36 100.0 30 .................................... TCAAAGAAAGATAATAATGAAACTCAAGTA 541647 36 100.0 30 .................................... TTAGATATAAATCTTGTAACGTTAGAACAA 541713 36 100.0 30 .................................... TTGGTTTGATGACGAACTATTCAGTTGCTT 541779 36 100.0 30 .................................... CAGCACTCTTTTTCTGTTAACAATCTGTAT 541845 36 100.0 30 .................................... AAGCATTAAATGCTATTCATAAAGCGATGA 541911 36 97.2 30 A................................... TGATTTAACTGTAGCCTTTACACTACTTTT 541977 36 100.0 30 .................................... CATTTTCGCGAAACGATATTGATCCACTTC 542043 36 100.0 30 .................................... TGAATATCAGCCGGTAAGTGGTCCTGAACC 542109 36 97.2 31 .....................A.............. AAAAGTTCTTTTTTGTCCCGCTTGTAATGGA 542176 36 100.0 30 .................................... TGGGTTTTTGTTATGGTGTTAGCTAATTAA 542242 36 100.0 30 .................................... TAGCAAATTAACACTAGAATACGATTCAGG 542308 36 100.0 30 .................................... AGCCAAATTAAAGAGCAAACCTTTGACCCG 542374 36 100.0 30 .................................... AGAACAACTACAAAACCAGCTTCTTGAGCG 542440 36 75.0 0 ............CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAGAAGAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACGGAGGAAGAACTGCTAGAGTTGAGGCGGTATATCTCTTTATATCAAGTCAAAGTTCTATTTATTGAACCTAGAAAGATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGATACAGTATTACTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATTCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTCGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATCTTATATGATTATATTCTAAATGCGAGTAAAAATAGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //