Array 1 964623-965931 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053055.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM 22543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 964623 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 964684 29 100.0 32 ............................. ACTGATATAGATTCTATCCTGTCGGCGTCCCA 964745 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 964806 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 964867 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 964928 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 964989 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 965050 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 965111 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 965172 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 965233 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 965294 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 965355 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 965416 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 965477 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 965538 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 965599 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 965660 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 965721 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 965782 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 965843 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 965904 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 982191-983973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053055.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM 22543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 982191 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 982253 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 982315 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 982376 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 982437 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 982498 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 982559 29 96.6 32 ...........A................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 982620 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 982681 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 982742 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 982803 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 982864 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 982925 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 982987 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 983089 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 983150 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 983212 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 983273 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 983334 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 983395 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 983456 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 983517 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 983578 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 983639 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 983700 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 983761 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 983822 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 983883 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 983944 29 96.6 0 ............T................ | A [983971] ========== ====== ====== ====== ============================= ========================================================================= ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //