Array 1 46188-46696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOOT010000026.1 Bacteroides uniformis strain DFI.1.247 ANDAHMEC_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 46188 47 100.0 30 ............................................... AGTTCGGTAAGATGGATAAGGGCGCGGATA 46265 47 100.0 30 ............................................... TTTGCACGTGTTACAGCAAAACAAATTATA 46342 47 100.0 30 ............................................... TCGTGCTCTATAGCCTTGACCCCCCATCTG 46419 47 100.0 30 ............................................... CGTCCTCAAAGACGAAGTTAACAAACCTAC 46496 47 100.0 30 ............................................... AGTATTAAAGAACTTATGGAATTCTACAGT 46573 47 100.0 30 ............................................... GCTTGCCAATTTTGAAATACATGCCATAAT 46650 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 100.0 30 GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGGCCTGCTTTCCATATTTCGTCCAGAAACACGACATCGGCTGTGGGCAGATAGCCGTCGATGGCACGTTCTTACTTGTCGGATTCTTTCAGTCGGCTAATGCTGACAGGGCCGAATATCTCGTCGGGCGTAGAGAAGCGGGACATCAGGTATTCAAAGGCACGGGCATCTGTAAAAGCCGACTTTAGCCGCCTGGCTACCATTGACTTGGCTACTCCCGGAGGTCCCAGGAGCAGAATGCTCTCGCCTGCCAGAGCTGCCAGCAGGGAGAGGTTTATTTCAGTTTCTTTTTCGTATACTCCCCGGTTCATTTCGGAAAGGAGGAGACGAATGCGTTGGGTTATTTCCACAATATGATTTATTTATAGTCAGTACTCATGTATAAAGAAAAGTGTGTAAAGATACAAAATAGTAGGGAAATCAGAGAGAGTCTTATTAAGATTTAGTATCTTTGAACCATTGGAAACAGCGTCTTCTGTTTGGGCGATAGGTTCGTACCA # Right flank : CTGTTTTACCCGTTTTTACTACCTTTGTTTTGTTGTGATTTGCTCTCATTTTCATATATTTGTTGTAATCTGAAGTATCTTATTTGATTATCAACGCTTTGTAGAAAACTCGCATGAGAACGGGCAACGGATAAGAAAATTCCAAGCTGTTTAGAATCACTATATTCCTCATGCTTTCAAATAACTCTTTTTTCTTGATGCAAAGGTAGCATTTTTTCGTGATTGCCGGTAATTTTCGGGCATAAAATATCACGGTCATTTCAAGAAACATATACAGCGGACATGACAGCCATACCGTAGCCGAATCCCCGTAACTCACAGGCAAAGGTAACCCGTGTCCTGCTCGTACAAGCAAGGTCAAGCCCTCCGGGTGTCGTGGAAAAATCATCCTCGCCCGGAGGGCTTGCGGTATTTTTCCCGCCAACCTTGCATGTACGGGACACGACCTTTTATGGCCTGTAGTTACGGGAACTCCGGCCCCGAAAAGCCGGATCACTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 46098-48371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOOT010000018.1 Bacteroides uniformis strain DFI.1.247 ANDAHMEC_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 46098 46 78.7 30 TCC..-..G..AG.GAG.............................. AGGTTCCGAACAGTTACGACTGGCAATGTC 46174 47 100.0 30 ............................................... TCTTGACCCATGTAGGAGATATCCTCAACC 46251 47 100.0 30 ............................................... TGCGGGCGTTCCGAATATCGGGGCTGACCG 46328 47 100.0 29 ............................................... GCGCTTAAGTTGTCCGCTAACACGGGCGA 46404 47 100.0 30 ............................................... GGGTTCTCACCACCCTCTTCATATCCATGG 46481 47 100.0 30 ............................................... CCTGTCCGACTTCATGTATACTCTTTCTCC 46558 47 100.0 31 ............................................... AACGTGGCAATGACAATGACACCCGTAAACG 46636 47 100.0 30 ............................................... TCTGATTGTAATACTCAGCAGCCTTTGTAT 46713 47 100.0 30 ............................................... TGGAATATTTGTATTATTCGTTTATGTTAT 46790 47 100.0 29 ............................................... TGGAGAATAATATTTCCCAAAAAACACAT 46866 47 100.0 30 ............................................... TGCTTCGTCTAGGCATACCAGTACCTCTAC 46943 47 100.0 30 ............................................... GATATACAGAATAACAGGCTCATCTTCCCT 47020 47 100.0 29 ............................................... GGATAGATGCGCTTTTTTTAGTAAATACT 47096 47 100.0 30 ............................................... GGGCAAACTAATCACCACAGAGGATGGGTA 47173 47 100.0 29 ............................................... TGTACACCGTGAACCGCTTCAGGAACTGG 47249 47 100.0 30 ............................................... AGTATGTCGAAATAGAAATGGGACAATTCC 47326 47 100.0 30 ............................................... GTCATTATCAAAAGTGTCGTAGATGTGGTA 47403 47 100.0 29 ............................................... TATATAGCCAATCTTAAACAGGTAAAGAA 47479 47 100.0 30 ............................................... TGGCGTCGAAAATAGCCTTTAAATCATCCT 47556 47 100.0 30 ............................................... GGTGTCTATTAACCGTCCATGCTGATATAC 47633 47 100.0 30 ............................................... CTTCTGCTTGCTTGGCATAAGACGTTTGAC 47710 47 100.0 30 ............................................... TCATGCTTATATATATAATGTATGCCAAAA 47787 47 100.0 30 ............................................... CAGGGGCATGGTGGCAATCTCTATCAGTGC 47864 47 100.0 29 ............................................... TTCTGTGAAGAAATTGAAATTAGTATATG 47940 47 100.0 30 ............................................... ATCAGCATTCGCTTAGGGGTGTTGGAGGAC 48017 47 100.0 30 ............................................... AAACCGGCTGTCCGTATGGACGAGACACCC 48094 47 100.0 30 ............................................... TTTAACCGCCTCTGTGATTCCGGCTTTCCG 48171 47 100.0 30 ............................................... CTCGTGTACGATGAATCGTGATTCGCGTAC 48248 47 100.0 30 ............................................... TTTCGGGTATATTCTAACTTGCATGAAGCC 48325 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 30 47 99.3 30 GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : CACACTGAATGCCGCTTCGGAATATTTTCCGACATTCAACTTTGCCATTACGGGGCAATTCCCGTCGGCATCCACCTCGCTCTTTTTCAGGTAGAACGACACCTTTACATTTGCCTGGTTCATAACCAATTCCTTTGTTTGCAAAATTATTATATGCAGAGTAAATGAACGGCATGAAAAATGTAGCGGAACGTAGAATAAGACCCCTCGGCCTGCAAACAAAGCCTGTATTTTTTTCTGATACGGAAAAATATGACTAAGTTTGCGTCAGCAGACATGGAAAAAACAGCGTTCTTTGCGGTGGTAAACGGGGTTATCAATGAAAGACGAAAGCTTGTTTTTCAAGCCTCTTTTTTTATCCCGAAAAGGCAACGGATAAGTAGTGATTTGTCCTCCTAACTCCACCTAAAACTTGCTAAAAGCCTCCTGCGGAAGAATGTGGTACAAAACGACATATCCCTTTTGCTATCAAACACTTTACATTATTTTCTCCAAAGTTA # Right flank : CTGATTACAAGTAACAATCTAATATTCAAACGATTACACATAGTATTAGAATATAAAAAAAGAATGCTGCTTCTAAAAAAATCCCGCCATTGCGCGGGATTTTTTTAGAATAATTCTAATTGTTGTCCAGGCATATTCACATCCACAGTCTTTTTCCCATAAAAAAGTGCTATATTTCCAAATTGCTTGTCCGTAATGCACATAATTCCGACACTTCCATAGTCCGGTAAGAAAGATTTAACTCTTTTTATATGTACCTCCGCATTCTCACAACTCGCACAATGACGAACATATATAGAGAACTGGAACATCGTAAATCCATCCTTTTGCAGATTTTTTCTAAATTCCGCATACGCCTTTTTATCCTTCTTGGTTTCGGTAGGCAAATCAAACAACACTAATACCCACATAATGCGATATTCACTAAACCGGTCCATCACATCTCTGGATAGGATATTTTACGCAACTCACCACTGAAACATTTATACAGAGAAGCCGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //