Array 1 173178-171316 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBE01000001.1 Salmonella enterica subsp. enterica serovar Agbeni strain 86-0039 NODE_1_length_604817_cov_4.39389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173177 29 100.0 32 ............................. TCTGCCGAGGCTACAGGCGACGGCGAACACGC 173116 29 100.0 32 ............................. ATTATTATAATTGGATGTTACCATTATTTTGC 173055 29 100.0 32 ............................. GAGTTAAATTAATGAGACTATCCGCTTTTAAT 172994 29 100.0 32 ............................. TATCTGTATAAATTGTTACACCGTTTATAATT 172933 29 100.0 32 ............................. AAATCCAGATAATTTTACACCCCCTGCACCTC 172872 29 100.0 32 ............................. TTGATGTTGATATTATTTCATTTTCTGAAAAT 172811 29 100.0 32 ............................. GTTCTCGGCCGTGTAACATCTACCGCCCAGAA 172750 29 100.0 32 ............................. GGCTGGATTGTCAACGCCGCCAACATCAAAAA 172689 29 100.0 32 ............................. CGTCGATGACCCTACCAAATGGCGTAAATGCT 172628 29 100.0 32 ............................. CCGGATCCCCTATTCCGCGATGAGTACGCAAA 172567 29 100.0 33 ............................. CGGGGTTGCACCGAGTTAGTAGCATACTTGCGG 172505 29 100.0 32 ............................. GGGGAAAATTGCTGTGTGATATAGACGAATTG 172444 29 100.0 32 ............................. GGGGAAAATTGCTGTGTGATATAGACGAATTG 172383 29 100.0 32 ............................. GCGGAAGCGCCAGGATACCCTGAAACGCTACC 172322 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAA 172261 29 100.0 32 ............................. TAAATACTCAATCATTAACCGAAGTTACGTTT 172200 29 100.0 33 ............................. TCGCAACCCGCCTTATTTAATTATTGAAGCGGC 172138 29 100.0 32 ............................. GAATATAGTTTCATCGTTATTTGTGACGTCAT 172077 29 100.0 32 ............................. GGTAAAGAGCCTAAATATTTTATATTAGATGA 172016 29 100.0 32 ............................. TCGGGCAAAAAAAGCGTGTTCACCGCTGCGCC 171955 29 100.0 32 ............................. GTGCGTGTAGGGAATGATCAGCGTATCGGACA 171894 29 100.0 32 ............................. CAACTTTGGATCGTTTATATTCATCGATATCC 171833 29 100.0 32 ............................. CACCTGGTAAATATTTTTCTAATCAGTCGATA 171772 29 100.0 32 ............................. TACCGAAAAATATTCAGTCCCCTGAAGCGCGT 171711 29 100.0 32 ............................. CCAGCTGACAACCTGGCGTTTGTGGTTCGTTA 171650 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAAGATGAGC 171589 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGCAGCG 171528 29 100.0 32 ............................. ACGCCTTCGTAGCATACCAGCTTGCTTATAAA 171467 29 100.0 32 ............................. TTTTGGGCGGCCCTGGACACCCGACGCGGCTC 171406 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 171345 29 100.0 0 ............................. | A [171318] ========== ====== ====== ====== ============================= ================================= ================== 31 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191523-189725 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBE01000001.1 Salmonella enterica subsp. enterica serovar Agbeni strain 86-0039 NODE_1_length_604817_cov_4.39389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191522 29 100.0 32 ............................. CGGTGATCCAGAGCGTTTCGATCTGATTGTGG 191461 29 100.0 32 ............................. ATTTATAAATTCAGTAGTAGAAAATAATTCAT 191400 29 100.0 32 ............................. ATGGAACTGTTGATAAAACTATAGACGACGAA 191339 29 100.0 32 ............................. ATCAACCCTCAAATGTGGTTATTTGCGCAGGC 191278 29 100.0 32 ............................. GGCGCGCCTGCGCCCTCTGGGACTCGTGTCAA 191217 29 100.0 32 ............................. GTTCGGATATAGAATATAATTTAAAATCGATG 191156 29 100.0 32 ............................. CATTACAGTCAGCTACATTAAACAATGTTCGT 191095 29 100.0 32 ............................. GGTAATCATAATCAGATGCATCCACATATTTT 191034 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 190973 29 100.0 33 ............................. AATTCTCGTTTACACACACATCACCGGCTACGC 190911 29 100.0 32 ............................. TGTGATTTACCGCTTTCCTTATTAATCGTTCG 190850 29 96.6 32 ............................T GGCGTAATGTTTCCATTGCAGAAACTGCGGGC 190789 29 100.0 32 ............................. TTACGAATGAGAACCCATTTAGAGGTCGAATC 190728 29 100.0 32 ............................. CGATGTTCCGTGATAAAGAGGCGTTTTCCGAA 190667 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 190606 29 100.0 32 ............................. GTTTCTATTAGTTGCCTAGTATTTCTCAGTAA 190545 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 190484 29 100.0 32 ............................. TGCTTTTAGGCTTAGGCGCTTTCCCTGTTAAT 190423 29 100.0 32 ............................. CATAACGAATAGTTTGAGATAGATTAGCTTTT 190362 29 100.0 32 ............................. ACGGGCAGATAACGCCATCTATATTATGACCA 190301 29 100.0 32 ............................. TAATACCATTCGCCGTTGGTGTTCTGAATATC 190240 29 100.0 32 ............................. TAGCTTGCTTAGACATTCCGTCCCAAAGAGTA 190179 29 100.0 32 ............................. GGCCAATCCTTGCGTCGAATTAAAGCGCTGAT 190118 29 100.0 32 ............................. GATTATAGTGAGAATCGCAGTAAAGCAGCACA 190057 29 100.0 32 ............................. GGGACGTCACCATTTTTGAATTTATCAGCCGC 189996 29 100.0 32 ............................. GCTTTCTCGCCCCATTCAATCATGTACTCGAA 189935 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 189874 29 89.7 32 A...........T...T............ GCCCATACATTAAAAATCGTGGACGCCAACGG 189813 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 189752 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //