Array 1 605713-604707 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MJOT01000016.1 Listeria monocytogenes strain BCW_4252 PROKKA_contig000016, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
    605712	    29	 100.0	    38	.............................	GACAAAATCTATGACCATTTCCCAACTAAGTACGAACA	
    605645	    29	 100.0	    35	.............................	TGTACTAAATATAGTCAAATTGCGGATATATCTGG   	
    605581	    29	 100.0	    36	.............................	GGAGAGGTAAGTTAATACCTCATCCAAAACACGTTG  	
    605516	    29	 100.0	    35	.............................	TTCGCTCTCCTCCTTCAATCTTTTAATTATTTTAA   	
    605452	    29	 100.0	    36	.............................	TCATCACGAACATAGTTTATTTCTTCGCCATCTTGA  	
    605387	    29	 100.0	    36	.............................	AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT  	
    605322	    29	  96.6	    38	................T............	ACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTT	
    605255	    29	  96.6	    37	................T............	AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC 	
    605189	    29	 100.0	    37	.............................	GAACCAGTAAGCATCATATTTTTATGAATTGCTTTTA 	
    605123	    29	 100.0	    36	.............................	GAATTATTAGAAAAAATGAAGCAACAAGGTATTGAA  	
    605058	    29	 100.0	    36	.............................	TTTTACATGGGAGTCAAAAGAGCAACTTAATATACT  	
    604993	    29	 100.0	    34	.............................	GTTGGTAGGTTTAACCAAAGATGATCACCATGTC    	
    604930	    29	 100.0	    34	.............................	ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG    	
    604867	    29	  96.6	    37	................A............	TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 	
    604801	    29	  75.9	    36	......T.C.A.C...CA...T.......	GCAGAAGCAGCAAGATAACCAAAAGTAATGACTTTC  	G [604777]
    604735	    29	  79.3	     0	......A..T....AGA......A.....	|                                     	
==========	======	======	======	=============================	======================================	==================
        16	    29	  96.6	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                      	       

# Left flank :   GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGTTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCAGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT

# Questionable array : NO	 Score: 6.09
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [15-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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