Array 1 107853-106376 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNM01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1575 NODE_2_length_342406_cov_3.02283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107852 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107791 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107729 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107668 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107607 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107546 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107485 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107424 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107363 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107302 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107241 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107180 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107119 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107057 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106954 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106893 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106832 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106771 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106710 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106649 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106588 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106527 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106466 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106405 29 96.6 0 A............................ | A [106378] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125477-123984 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNM01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1575 NODE_2_length_342406_cov_3.02283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125476 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125415 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125354 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125293 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125232 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125171 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125110 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125049 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124988 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124927 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124866 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124805 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124744 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124683 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124622 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124561 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124499 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124438 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124377 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124316 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124255 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124194 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124133 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124072 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124011 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //