Array 1 45086-44060 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FEVJ01000004.1 Neisseria meningitidis strain 2842STDY5881254, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     45085	    36	  94.4	    30	........G...A.......................	TTCTATTATAAAAGCTGCCTGACTTACTCG	
     45019	    36	 100.0	    30	....................................	CGACAACAAAGCCGTCTATGACCTGACCGA	
     44953	    36	 100.0	    30	....................................	TTGGGAGGTGGAAAACCGAATCCTGCACGA	
     44887	    36	 100.0	    30	....................................	AAGCAAATCATTTTCATAGTCAGCAGCTTC	
     44821	    36	  97.2	    30	......................T.............	ACGTGAGTTTGTCTATGAGTTCGACGGCGT	
     44755	    36	 100.0	    30	....................................	TGAGAAAGATTTAAGAACTAAGTTCCCATC	
     44689	    36	 100.0	    30	....................................	CTTTCACTTCAGTAATGGCTTCGGCATATA	
     44623	    36	 100.0	    30	....................................	TAAATTTTTGATTTTGATTTTTTCTATACA	
     44557	    36	 100.0	    30	....................................	TGAGAAAGATTTAAGAACTAAGTTCCCATC	
     44491	    36	 100.0	    30	....................................	TGAGAAAGATTTAAGAACTAAGTTCCCATC	
     44425	    36	 100.0	    30	....................................	TTTGCTGCCCGACAATGCGCGTCCGCAGAT	
     44359	    36	 100.0	    30	....................................	TTTGCTGCCCGACAATGCGCGTCCGCAGAT	
     44293	    36	  97.2	    30	............................A.......	CAGAAGATGATAACTGTGCTGGGGGTGCGT	
     44227	    36	 100.0	    30	....................................	ACGCAATAACGGCGAGTTTACGCATCAATG	
     44161	    36	 100.0	    30	....................................	TAACGATTGAAAGTGAGTATGTATTAAGTA	
     44095	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.3	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : NA
//