Array 1 19149-18038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJY010000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 6191 contig46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 19148 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 19087 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 19025 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 18964 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 18903 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 18842 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 18781 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 18719 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 18616 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18555 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18494 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18433 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 18372 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18311 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18250 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18189 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18128 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18067 29 96.6 0 A............................ | A [18040] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13510-14941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJY010000095.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 6191 contig95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13510 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 13571 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 13632 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 13693 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 13754 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 13815 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 13876 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 13937 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 13998 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 14059 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 14120 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 14181 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 14242 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 14303 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 14364 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 14426 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 14487 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 14548 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 14609 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 14670 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 14731 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 14792 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 14853 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 14914 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //