Array 1 739-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRG01000015.1 Thiocystis violacea strain DSM 207 scaffold0015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 738 28 100.0 36 ............................ TTCTGGCTCGCGGCCCGGTACGCCGGGAACGGCAGT 674 28 100.0 36 ............................ TATGAACGATCTCGCTCTCACTACCCAAGAACTCGG 610 28 100.0 36 ............................ ACTAAGCAAGCCGAGTCCATTCGGGAAGATCTGTGG 546 28 100.0 36 ............................ ATGCTCCTTGAAGTATTGGAGCATGAGGGCGGCCCA 482 28 100.0 36 ............................ GTCTTTCAGGTCTTTGGTTGAACAGATCAAATGAAC 418 28 100.0 36 ............................ AGCCGTGCCGCTCATCGTTGGGCAACCCGTGAAGGC 354 28 100.0 36 ............................ GCGTCGCGTCCAGTCTTGGCTAGGGTTTTCACCGAG 290 28 100.0 35 ............................ CAAATAGGACGAGCTAGAGGCGTTGTTGAGCACGT 227 28 100.0 36 ............................ ATTCTCGTTAAGTCGCGTAAGCGCGTCGGCATGCTT 163 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 10 28 100.0 36 ATTTACGCATCCCATAGGGAGTAGAAAG # Left flank : CTATCGTCAGCGGATTCTCGAAGAGGTCTTCGCCTTGCAAGCAGGGCTGCTTGGCGTGCGGGAGTACGTGCCCTTTACGCTCAAAGTCTAGAGGTAGTGACGTTTGTTCACGCTCATTTCCTATGACGTTCCAGCCGAACGAACACGGATCTTTCATAAGATTCTGTCGCGGTATCTGATGCGACTCCAGTTCAGCGTCTTTTGCGGGGATCTCAGACAAAGCGACTACCTGAAGCTGCTCAAGGATCTGAAGTCGGCACGGACGACCGACGATCGGTTAATGATCCTGCGAACGGCCAACCGGCGAAATATCGAGATGGAGATCCACCACGACGACATCGAAGAGTCCTACGAGAGTCATATCCGTGGGATGGTCCTCTGACTACGACCCCCGGTTCGTCCGAACGGCCAGGAGGTCGAAGTGCGGATCAACCCTTGTAAGCCCATTTTTTCCTTGAACGGAGGTCTTATTTCGAGACAAAATTTAGTGAAATCAGGAG # Right flank : GTACGGGCGAGCAACTGTGTTTCAGGTCAAGCGGTTTTCCCATGAGCAGGATCCCAGTGCGCCTGATCGCGCAGCATGGCGTTGACGATGGTGAGGAGCTTGCGCATGCACGCCACGAGGGCCACCTTGGCGACCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACGCATCCCATAGGGAGTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 51563-51290 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRG01000035.1 Thiocystis violacea strain DSM 207 scaffold0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51562 29 96.6 32 .........T................... ATGTACGAATTGAGGTTCGGCGAAGCACCGCC 51501 29 100.0 32 ............................. ACAGGCGGTGGCGGCCGACAGACAGGTGTTGG 51440 29 100.0 32 ............................. ATCTCTCGATCGCCATCTTCACATATTGTTTA 51379 29 96.6 32 ............T................ GTGTCCTGTCGATAGTCGCGGCGAGACAGGAT 51318 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : TGCTGCGACGATCAGGAGCCATCCTGATTTTTGGCGCGATCAAGCAGTCGATTCCGTAACGACCCGCCACCACCAACGGCAACCATGATACCTTGCAATAAACGCGGAAACCGAGATGCCGCGAGAGTTTCGCGCGCAAATTCGCTGAGATTTTTTTTTGCCAGTCTCGATTCCCGACCAGAATGCGCCAGATACATCCAGCGCCCACGCAGTGTCTGATTGAGTCGCGATGCAAGGACGGCTTGCCACCCTCTGAGTCTTAGTGTTAAGTGCGCTAGGATCGTCCGAACTGAGCTTTCTCGGAAATCACCTTTAAACTCGACTTTGGCCATTTTGGCAGTCTGCCAAGGCGCTAACTGCCTGAAATATCATGAGGGCGGAAAATTAGAGGGGTCGGGAAGCCCGAACGCCTTAAAGAAAACCCCTTTGAAATCGGCCATTTTGTTGGTCGATTTGTCCGTGCCTGATTTTCTTTTGAAGATCAGGTAAGTACGGGAAGA # Right flank : CGAACTTGGCTGCCCGCTGGGAGCGCGGTAACGGCCTCAGCCCACCCGCAGCGTCCAGTTGATCGGCAGCCGCGAGTTGCGCCCCCAGCCCTCGACCCACCAGCGACTCGCTTTTCTGCTCACCGCTAATCCGATGAAGACCGTCAGCAACTGGAGCAGAAGACCAAGAAGACCCGCGATACCTGTCGCGCTCCATTGATCAAGGAAGATGACCAGCAAGCCTGGCTGACGTGCAAGCTGTGTTGGAAAATAGCATCGGTCCCGCCAAAGCCTTCGGCTACGGTCTGCTGCTGGTGCGTCGGGTCACGCTCCTGTGAGCTAGGCTTCTCGGTGAGCGTTTCATTCAGACGAGAGGAGACCCTCATGAATTGGCAACTGCAAGAAGCAAGGGACAAATTTAGCCAGGTGTTCGAGGAGGCCCAGCGTTCCGGGCCGCAAGTCATCACGGTCGGTGGAGAGGAGGCGGCAATCCTGCTGTCGATGGATGACTATCGGCGGCT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39718-36009 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRG01000026.1 Thiocystis violacea strain DSM 207 scaffold0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 39717 37 100.0 35 ..................................... GAATCCATGAGATCACCGAACCGGACGGATCCGTC 39645 37 100.0 35 ..................................... GTCGAGATCCGCCACGAGATCCACATCGCCCGCAC 39573 37 100.0 34 ..................................... AGATCCTCTCGCTCGGGATGCGTCAGGGCCTGTT 39502 37 100.0 35 ..................................... TCCAAGGCCAGCCCGGTCGAGCAGCTCAGCGTGCG 39430 37 100.0 37 ..................................... AACTGGTCTCCGCTGACCAGACCCCGATCGTCGGCTA 39356 37 100.0 35 ..................................... GTCCTGGAGGGCCTGATCGGCGACGACGGCGACGG 39284 37 100.0 35 ..................................... GGATCGTACCAACTGGAGGCCAGATCATCTGGCGT 39212 37 100.0 36 ..................................... GCCGACGACGCCGCAGGCTGGGCTGAGCGCGTCAAG 39139 37 100.0 34 ..................................... CGGGAAGTGGATCTCGATCTTGTCGCCGATGACG 39068 37 100.0 35 ..................................... GACTGGGGCCAGGGCGAGGAAGCCTGGGCCCATGA 38996 37 100.0 35 ..................................... TCAGACGGCTCGTCCATCGTCGCCGACGCCGACCA 38924 37 100.0 35 ..................................... CAGTAAAGTGCATCCAGGTCGACAGTGCGAGCCGC 38852 37 100.0 36 ..................................... AGTCATGAGTGATCCAGACCTCCTCGCCACCCAGCG 38779 37 100.0 36 ..................................... GTCGTAGAAATCCCCGGTGCTGAACGCCAGCACCGA 38706 37 100.0 34 ..................................... GTCGGTGTCGAATTCGATCTCCACCGGTTTGGGG 38635 37 100.0 36 ..................................... AAATACTCCGAACGCCAGCAATCGGAGGACCGCTGC 38562 37 100.0 34 ..................................... TCCTTGAAGAGCGCGCGGGCTTCCTCGGGGAGCG 38491 37 100.0 35 ..................................... CAAGAGACCGCCCGCTACGTGCGCAGCATCATGGA 38419 37 100.0 35 ..................................... TCCAGGCTGTCCCCGTAGATCTGGAAAATCTCGCT 38347 37 100.0 34 ..................................... GCCGGCGAAGGCGGGCAGGCGATGGCCATCCTCG 38276 37 100.0 35 ..................................... AAAAGGGGCAGCGCACGCCGGGGCGCGGCGCCGCG 38204 37 100.0 35 ..................................... TTGACGGCCGGCTTGCTGTAGGCGTGACCGTTGAC 38132 37 100.0 36 ..................................... CGGTGCCCGTGGTGTTGGGCGGTCCGAGCGCGGACC 38059 37 100.0 36 ..................................... ATCGCCGCTCGATGACAGCCCGGTGTAGCGAGACCG 37986 37 100.0 36 ..................................... CCACTCTCGATCTCCGCCATCACCCGAGCGCTGCGC 37913 37 100.0 35 ..................................... CAGCGCTCCGAGGAGTATCAGGCCCCGGCCTGGAT 37841 37 100.0 33 ..................................... TGATTATCAATGCCAGCCTACCCAACGCGCCGA 37771 37 100.0 34 ..................................... GTCAAGCCGAAATTGCTTTTGACGCCTACCCTAG 37700 37 100.0 35 ..................................... AGTCGCGCGGCAAGCTAACTTCCGGGGTGGTAGTT 37628 37 100.0 35 ..................................... GCTCAGGGAAATTGGTATCTGCTGCAAGACCAAGG 37556 37 100.0 35 ..................................... TCCCAAATCTCGATAGGCCAGCCTTGAAACTCATT 37484 37 100.0 34 ..................................... CTTAAGCGCTGACGACTTCGCGCCATTCGGTATG 37413 37 100.0 35 ..................................... CGAGATCAGACGGTCGTATTCGGCGCGGGCGGCGA 37341 37 100.0 35 ..................................... ATGGGCGGGTAGCACATCAGGGCCACCAGCCAGCC 37269 37 100.0 36 ..................................... GATGATTCCCGCGATCCAGAAGCGCGCCGCGAGATC 37196 37 100.0 35 ..................................... ATGCAGACCTATGTGGGTGAGGTCGTCCAGGGGGC 37124 37 100.0 36 ..................................... ACTTCGACTATTGCGGACGTTGCCACTGTCGGCGGC 37051 37 100.0 35 ..................................... CCTTGGCCTTATGCGCTAGTTCGGCCAGATCTTCC 36979 37 100.0 36 ..................................... ATTTTAAACTCAAGCAGCCCTACGCATTCTACACCG 36906 37 100.0 35 ..................................... CAGGAGAATCAACGATGCCGCCCCGCCATTATGGC 36834 37 100.0 36 ..................................... CTACGTCAAGAGCCGGATTGAGTCCACGTTCATCGT 36761 37 97.3 34 .T................................... ACCTCCAAGTTCATCGGGTACGGTGGAATCGAGA 36690 37 97.3 35 .T................................... GCCAAGATTGCCACGGGCGATTGGGATGTGGTGAT 36618 37 97.3 35 .T................................... AATGCGGCGGAGCGGACGACCGGGTCCATCTGGAC 36546 37 97.3 34 .T................................... GTCCCGCGCGCGGACCTGGACGCGGCGCTCAACC 36475 37 100.0 35 ..................................... AAATAGCTCTCGAATCCCACAGCGTCAGTCTCCTC 36403 37 100.0 35 ..................................... TGTGGGCTCCTCGGGATGTCCGACGAGAAGGCCAA 36331 37 100.0 35 ..................................... GAGTCCGCCGACATCCGCTATGTGCGGGAATCCAT 36259 37 100.0 35 ..................................... TGTCGCAGGCGGTCAAGCTCGTTTGGCCGGAGGTG 36187 37 100.0 34 ..................................... CAAGGTCGTGCTGGGGCAGACCGCCAGCTCGGAA 36116 37 100.0 34 ..................................... CTCTTGGACTTGCTGAAACAGTAAGCGGTGCTTG 36045 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 52 37 99.8 35 GAATCGCCCGGCTAATCAGCCGGGCGCGGATTGAAAC # Left flank : GCCAACAGCCCACTCATCAGGGATTGCCCCATGCTGATCATCGCCACCTACGATGTCTCCACGGAAACCCCGGAAGGCCGCCGCCGTCTGCGCCGTGTCGCCAAGGTCTGCGAGCGCGTCGGCCAACGGGTCCAGAAATCCGTCTTCGAGTGCGAGATCGACCAGATGCAGTTCGAGGCGTTGGAGCGCGAGCTTCTGGCCGAGATCGACCTGGAGAAAGACAACCTGCGCTTCTACCGCATCACCGAGCCGCGCGGCATGCGGGTCAAACAGCACGGCGTCTTCCGCTCGATCGACTTCGACGGACCCCTGCTCGTATGACGCGCGAACCCCAAGTGAAGGAGAAATCGCGGGCGGTTCGCGCAACGGCTAAGTTGCTGAATTATCAGCACAGCGGACCGATGCACCCAAGCCTGACCCAGCCATCCGCTTGCACCCCTCGGCCGATTCGCGCAACATCGCGTTTCCGGGCCTTTGAATCAATAGGTTACAGCGGCTCG # Right flank : ATTGAGAGCGAATGAATCAGCTACGGTATCCAGCCCAACGAAGTATCGCCCGGCTAATCGGCTCGAAAATTCCCAAGCTTCAGGAGACCCGCACCTCGATCCTGCGTCCCAGGACACGCGCGGCCGCTTCGATCTGATCGAAGCGCGAGGCGTGTTTGAGATCGAACAGGCGATCCACTTGTGGCAGGTGCCAGCCCAGTCGTCGCGCCAGTTCGGCCTTGCGGATGCCCTGCTCGGTCATGGCCTGATAGACGCCGAGCTTGGCGCATTCCAGGGCCGATGGGCGCACCGTCGGACGGCCGTCAGCGGCCGAGGGGACGGGCAGCGGACGGCGCGCCTCGACATAGAACGAGAGTGCGGTTTCCAGCGCGTCGACGGCGTAGAGCAGTGCTTCGTCTTCGTCCTCGCCTTGCGTGATGGCCTCGGGGACGTCCGCGAAGGTCACGACAAAGCCGCCCTCGGGCTGGGCTTCGAGAATAACGGGGTAATCGAACATGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCGCCCGGCTAATCAGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.00,-17.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 1 27575-22433 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRG01000041.1 Thiocystis violacea strain DSM 207 scaffold0041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 27574 28 100.0 32 ............................ ACATCGCCGGGATTGCTCCACAGGTGCATCGC 27514 28 100.0 32 ............................ CTTTCCGTCGAAGAGTGGGCACAAATCACGGG 27454 28 100.0 32 ............................ TTCAGCAAACCAGCATCGACGGCCAGGTGCGC 27394 28 100.0 32 ............................ AACACAGGTGATACATGACCAACGAAGACATC 27334 28 100.0 32 ............................ GATAACGAGGGCGATCCAGAATGCTTCGATGG 27274 28 100.0 32 ............................ TACACCGTGCGCTTCCTAATTCGGCGTCTGCC 27214 28 100.0 32 ............................ CGAAACGCTCTCGCCGTGGCAATGCGCTCCTT 27154 28 100.0 32 ............................ GACAAGGCTCTGAACGTTGGAAGGTACATCCG 27094 28 100.0 33 ............................ AGAAAGGGTCTGGAAATTACGGCGGATTCCGAA 27033 28 100.0 32 ............................ AGGATAGGGATGGACAGGCATGGCCGGAGAGG 26973 28 100.0 32 ............................ AACGAACACAGATGGAGACTGTGGGACTCCGC 26913 28 100.0 32 ............................ ATGCACCAGCGCCGCGCCCACCAGGGCCAGAG 26853 28 100.0 33 ............................ ATGTTGGCGATGAAGTCTCGCGGGGTCATTGCA 26792 28 100.0 32 ............................ AAGTCGGGGGATTCGATGACAAAGAATTTCAA 26732 28 100.0 32 ............................ TTGGGCAGCCACAGAACGATGTGATAGTGCAG 26672 28 100.0 32 ............................ GTCAAGGGCGACCGGTACGCACCAATATTCCG 26612 28 100.0 32 ............................ TTCGAAGGTCCGGAGATCGAAACGCGTACCTT 26552 28 100.0 32 ............................ ATTGATCGGCTAGGGGAGGGGGCTATGGCCAT 26492 28 100.0 32 ............................ TTACAACGCCGAGCGCGCGGGTCGGCTGGAGC 26432 28 100.0 32 ............................ ACCAGCTCCGGCGCATCGCTTGGGACCGACGA 26372 28 100.0 32 ............................ CCATTTGGGGTCGGGGCGCGAGCCGTGGTCGA 26312 28 100.0 32 ............................ TTGTAGGTTGGCGCTTCATCCCATGGCGGATC 26252 28 100.0 32 ............................ ACTCGGTACCTATTGGACAATCGGCCTCACCC 26192 28 100.0 32 ............................ GCCGACCCGAAAGCGTAATTGTAGGTCTTGTC 26132 28 100.0 32 ............................ TCCCCGACATCGGACGGGGCTTCGGGGAGCAG 26072 28 100.0 32 ............................ TTGATGGACAGGTTCGAGGCGTCGCCCGTCTG 26012 28 100.0 32 ............................ ACTCCGCCGGCTGGTGGGCTTCCTTGCGGCTC 25952 28 100.0 32 ............................ TTCGCCGGCCAATCGCCCGCGGACGGCTTCAC 25892 28 100.0 32 ............................ CACCGCAACAACCTGACCAGCGTGAACGCCGG 25832 28 100.0 32 ............................ AAACGATATTCGCGGGCGTGATGGATGCCCTG 25772 28 100.0 32 ............................ GTCGGTGCCGGTCGTGCCGTCGGTGCCGGTCG 25712 28 100.0 33 ............................ CTAACACAGGATGGATATAGGATGCTTTACATA 25651 28 100.0 32 ............................ GAAGTCATGCGGGTGGTCTGGGTGATTGTCGG 25591 28 100.0 32 ............................ AGGAACACAATAAATGTGATTGGCCAGAGTAC 25531 28 100.0 32 ............................ ATACCGTGCCGTAGACAACGGCTCCGGCCTGG 25471 28 100.0 32 ............................ TTGATGTCGTGCAGGCAGTGCTCGACCTCGTC 25411 28 100.0 32 ............................ TGTTTATCCGGTTTCGGCAGGGTCAGACCCAC 25351 28 100.0 32 ............................ ATACCGTGCCGTAGACAACGGCTCCGGCCTGG 25291 28 100.0 32 ............................ TTGATGTCGTGCAGGCAGTGCTCGACCTCGTC 25231 28 100.0 32 ............................ AGGCTTGGGTGGCTCGTCGGTTAGGAGGGTCC 25171 28 100.0 32 ............................ ATGACGGCGGAGCAAACCACGACGTTCGACGT 25111 28 100.0 32 ............................ TTGATGAAAGTCGCTTTGGGCCATCGATTGAC 25051 28 100.0 32 ............................ TTGATTGTGGCGTCAGGTAACGCCGAAGCCGT 24991 28 100.0 32 ............................ TTTGTAGCGTGCGGAGCGACAAAGGACGAGCG 24931 28 100.0 32 ............................ GTTGAAATAAGGGGATCTCAACGCCCTGAAAT 24871 28 100.0 32 ............................ TCGCGCGCTCTTAATCCAGCGTGATACGAGTC 24811 28 100.0 32 ............................ ACTATTGCCCGCGTGCGCCGCTCTTTCTGGAT 24751 28 100.0 32 ............................ AACAAGCCCGTGCTCATGCTCGCGCCGCTGGC 24691 28 100.0 34 ............................ ACATGTGCCGAAAGACTCGGACGGCTCCTAGGGG 24629 28 100.0 32 ............................ TTGATGTCATGGTGCTTGGAGCAGGCAGGGGA 24569 28 100.0 32 ............................ TGGCGTCCTGGATGAGTCGCTCGGGGCTCGTG 24509 28 100.0 32 ............................ AGTCCAGCTCGACCTCGCGCGAGCCCACTCCT 24449 28 100.0 32 ............................ ACTCCGCCGACGGGTGGGCGTCCATGCTTGGA 24389 28 100.0 32 ............................ TGACCCACCCGATCGCCCGCGACCGCATCGTC 24329 28 100.0 32 ............................ TAATCGAGCGAGTGTTAGGCTAGCCTACATGA 24269 28 100.0 32 ............................ TCCGCCAGCGCCACGTACTGCGCCCTCCCCTC 24209 28 100.0 32 ............................ ATGACAACCCGGCGCTCGGGCGTCATGCGGAG 24149 28 100.0 32 ............................ AACCGGACGCGCAACAAACACGACGCCCGGGA 24089 28 100.0 32 ............................ AAGTGGCGACAGTTGTGGCCCCATGCCGCCGG 24029 28 100.0 32 ............................ TGCGAGCGCTGGCCGACAGCCCCGTGATCGCC 23969 28 100.0 32 ............................ GAGCACCGCGCGCGCGGCGATCACGCCGGCAT 23909 28 100.0 32 ............................ AACCGCCGCGCCTGACCCTGTACCGCGCCGGC 23849 28 100.0 32 ............................ GACAGGGCCGGGGATCCGGAGACCACGGCATG 23789 28 100.0 32 ............................ TTGTCGTCCTTCTGGGATGAATCGCCCGGTCG 23729 28 100.0 32 ............................ GAGCGGTGACCGCCGTTGCCGCGCTGCCGGTC 23669 28 100.0 32 ............................ AGAACAAGGTGACGGGGCCATAGGCGACGCCC 23609 28 100.0 32 ............................ TGATGGCCCAGTTGTACAAGGGCCAGCCAGAC 23549 28 96.4 32 ......................T..... GGTCAGAAGCGACAGATCGGGCCGCACGTCCC 23489 28 100.0 32 ............................ CAGGGTCTTCAGCGCTACGTGACACCGGAGCG 23429 28 100.0 32 ............................ TTTGACTGGCACAAATTTTCTTTGTGGACTCC 23369 28 100.0 40 ............................ GCGCCCGAGCACCCCGCTCACTGCGTTCACTCGTTCACTC 23301 28 100.0 32 ............................ TCCCCTAGCCAATCAATGGCAGCCGACGAATG 23241 28 100.0 32 ............................ CACACTCAAAGCCAATCTACCGAGGGCATCAA 23181 28 100.0 32 ............................ AAAGCCAATCCACCGAGGGCATCAATCCCGAA 23121 28 100.0 32 ............................ TTGGGCATCGACAAGGAGCCGGGACCGCCCTT 23061 28 100.0 32 ............................ ATGCAACCGCGCGCCCTTGGGCATCGATAAGG 23001 28 100.0 32 ............................ GCTGTCCCCGTCGGTGCTGGTGTGTAGCAAGA 22941 28 100.0 33 ............................ TGACAGCGATGTTCATTGCTCGCAAGGTTTCCG 22880 28 100.0 32 ............................ TACCCCAGAGGATTACGGCTTGCCGCCGTCGT 22820 28 100.0 32 ............................ TGCAAAACGATCTCGGTGGGAGACCCGATGGC 22760 28 100.0 32 ............................ ACCATGAGAAGCGCGGCCCGGATGCCTCTCGG 22700 28 100.0 32 ............................ GCCCGCGCCAACTGCGCGGACATCGCCCGCTG 22640 28 100.0 32 ............................ GCCGAGGTCCAGCCGCCAGGTATCGCGCCAGG 22580 28 100.0 32 ............................ AGCCAGGACGTGTGGCCCCACCGCCCGGTCAC 22520 28 100.0 32 ............................ AGCCAGGACGTGTGGCCCCACCGCCCGGTCAC 22460 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 86 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GGCGATCTGCGGAACCTGATGGAGTTATCGTGGCTGACCGGCATGCGCGATCACATCGACTTGTACGGACCGGCGCCGATACCGGACCGGATCGGTTACTGCACGGTTCGTCGGATGCAGGCCAAAAGCAGTCCCGAGCGGCTGCGTCGCCGTCTAGCCATACGTAAGGGCATCAGCGAGGAAGAAGCGCGACGATCCATTCCGGACAACAAAGCGAAACGGCTGGACTTGCCCTATCTCGCTATCAAGAGTCGGAGCACGGGACAAACCTTCCGGCTCTTCATCGATCAGCAACCATCGGCCCTTCAGAGTGAGGATGGCGTATTTAACCACTATGGATTCAGCCGCACGGCGACCCTGCCCTGGTTCTGACCCTTTTTTTCGAGGTCATCAATCGGCTTTTAAAATCAGTGTGTTAGGGTTTTGCGGAAAAAAGGGTGAGGTAACCATGAAAAGCGGATAAATTTATAAAAACAGAGGCTTGGGGTCTCTGTTTCCTA # Right flank : ACGGGGCAGGAACCGACGGACGATGGTTCCTGCCCCGGTACTAATTCGGCGGCCCGATCCCGAAGGCCCAGAGACCCAGGTTGAGGGTGACGAAGGAGAGCAGGGTCGTGATCAGCAGGGCGGAGGCACAGAGTTCACCCTGTCCGTAGCGTTGGGCGAGCAGTGGGAAGATCGTGACCATGGGCAGCCCGGAGAGGATTAGTGCGGCCTGGGTCAGCTTGGGGTCGAAGGCCGGAACCAGGGACAGCATCAGGAGTACCGCCGCGGGATGGATCAGGAGCTTGCCGCCGGCGATGGCCAGGGCCGCCTTGAGCCCATGGTGGAGCCGCTGACCGGCCAGGGCTCCGCCGATCGCGAACAGGGCCACCGCCGCCGCGGAGCCGGCCAGCATGTCCACCGTGCGCCCGAGCATGTCGGGCAGTCGCCAGCCGAGCCAGGCGAACAGAAGCCCGGCGGTGATGGCCTGGAGGATCGGATTCCTGGCCACCAGCCGCGCGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 251-471 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRG01000088.1 Thiocystis violacea strain DSM 207 scaffold0088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 251 29 100.0 35 ............................. ACAGTTCCTGGACAAGATCGACGAACATTGCGCCA 315 29 100.0 35 ............................. CGCAGCACAAATGCCGCACCGGCCAGGACGCGCGC 379 29 100.0 35 ............................. GGCGGATTTGTATGTGGGCGGGATTTGGCCCGAGA 443 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= =================================== ================== 4 29 99.2 35 TATTTACGCATCCCATAGGGAGTAGAAAG # Left flank : AAGGTTGACTTCGAGACGTCTACACCAACCCAACAGGTTTCAGAATGCATGCTCATCCCTCCCTATACCCCGCCTTGCAGAATCGGGCTTTACGCCCTGGCAACTGTTCGGGTTGTTGAGGAAAACCCCGCATCGACCCAAGCTCTCCCACGATCTCGAAATCAGAGGGGTTACGGTCTGAGACGGGTAAAACAAACCTACAACCGGACAAAACTAACTTACAAGGGGCGGGGACGGCTTGGAGCCGAGGT # Right flank : GCTGAAGTCCCCGGAAGTCGACTTTCAGCCGGGAGCGCACTAGTTCAAGGTGTTGCTCGCGGCGCTGGCCTAGACGATTCTCACCACGTTGATCCTTAATCCGGAAATCCGAACCACAAAGGCGCAAAGGACTCGAAATACAAGGGTTGGCCATGCGCCTGGTACTCACCCTCCGGGTGACTGTCGTAATCAAAGCAACTCGTTGAAATAATTTGCGTTCTTTGTGCTCTGTGCTCTTCGCGGTTCAACGACTTTTTATAGATTGAAAGCTTGTTCGATGGTGCCCCAATCGAGGGGATCGGCGCGTGGAGCACTACCGGCTTGTTCAAGCATCCGGGGCTATCGTTAGAGTCGGGATGACTGGCCGGGAGAAGGCCGGGAGGCTTGCCCTATCTGGTCCGATGTTGCCCGATAGGGCACTCGAAACCAGTCGTTGGGTGACTACGGCAAGCGCTGGAGAGATCGAGCGGAAGCTGGGGCGGGATCTTCGTCCCGCTAGA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTACGCATCCCATAGGGAGTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //