Array 1 1144-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKQ02000050.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal682 sal682v2_contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1143 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 1082 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 1021 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 960 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 899 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 838 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 777 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 715 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 654 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 593 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 532 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 471 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 410 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 349 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 288 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227 29 100.0 32 ............................. CCCCCCCTGACGCCGCGGTGGTCCCCTTCTGC 166 29 96.6 32 .G........................... CTGAGATAGCTCCACGCGTCGTTCAATTTATT 105 29 79.3 32 .C...T.......T..T........T..C CTAACAGGTTTAAATTTTCATTTCAACCCCAC 44 29 79.3 0 .CA...T......A.T......A...... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GCGTCCGAGAGGCGTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77479-76107 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKQ02000035.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal682 sal682v2_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77478 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 77417 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 77356 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 77295 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 77234 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 77173 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 77112 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 77051 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 76990 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 76929 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 76868 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 76807 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 76746 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 76685 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 76624 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 76563 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 76502 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 76441 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 76380 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 76319 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 76258 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 76197 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 76136 29 100.0 0 ............................. | A [76109] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //