Array 1 47774-47959 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLJ01000002.1 Cylindrospermopsis raciborskii GIHE 2018 C1_2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 47774 32 100.0 42 ................................ AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGTGTCC 47848 32 96.9 48 ........T....................... TAGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATAGTCT 47928 32 93.8 0 ........................G...T... | ========== ====== ====== ====== ================================ ================================================ ================== 3 32 96.9 46 TGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : AAAATTGGAATTAAACATGAACGTAAATTGGGTGAGGCTTGCCATTGCACGCTTAAGGCCCTTACGTTCTCCCCATATACTTGCCATGATTGCTGGCCATTCAGGGGATAGGGTTCCACATTGTCCAGAGGTACACTCTCAAATCTAATCTCCCTACAGCGCCATCCACATCTTGCCATTCTCCGGTAACTGGATGGATGGCGAAACCAGGATTTTCAGTGGGTAGGTTAGGGTCTGGGTATAGTTGCTGCTGTAGTGGCAGGAATTGGGTGGGTTCTGGTTCGATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTGTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAAGCT # Right flank : CGTAATAAGGTTGTTTCCAACAACCTTATTACGCGACGTTCATCAGGGTGCAAAGACGCCTGAAATTGTCTACCCAGAAAGTGACGGTCAACCGATGGCGGACAATACTAGACAATTTACATGGATTGTCAAAGTCAACCGCCCCACCCACAAGGGGATGGGGTTTTGCGCTCGATCAATAAATTATTACCTGCACGACAGCTTACCCTTGGGGGTCTTAAGCTGGGTTCAATTTTTTACCAGATGATAACTCATTCTTAACCTTTTAATTATTAATCTTTGCTATTGTAGTCAGATATTGTCAAACAATATGTTACGGCTTTAGCCAAAGGGTGATAGGCTCTTAAAATTGCCTTTAAACCATATAGCTAAAGCTTGTAGAGCTTAATAACTGATTATAAAGTCTAACAATTATTAAGATGTCACTATTTAACATTGCAGTAACTAACCTTTACTAATAACCCCTTCTGGCATTTCTGGCAATGAACCCTACTGAAAAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 256692-258567 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLJ01000002.1 Cylindrospermopsis raciborskii GIHE 2018 C1_2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 256692 36 100.0 41 .................................... TCGCTTAATCAGCATCAATTTTCCTAATGGTCATCAATTGT 256769 36 100.0 38 .................................... CTGTTAATAGCAGGACGACATGCCATATTAGTAAAAGT 256843 36 100.0 37 .................................... TCTTAGCCCCTTGTTTGGTTATCCATGTTTTTAATAT 256916 36 100.0 38 .................................... TCCTCGTATTGACCCCAGAATTAAAAATTCTACAACCA 256990 36 100.0 36 .................................... TCAGGTTTTATTCACCAAAACCAATAGCCGCTTTAA 257062 36 100.0 35 .................................... TTGTTTTCTACACCTGTTATCTTCTTGTTCTAGTG 257133 36 100.0 38 .................................... GATGAGCTAGAGATTGCTCTGGCTCTCTCCGACTACGA 257207 36 100.0 35 .................................... GATTAAAATTCAGCCAACTACTTCGTCATTACCAA 257278 36 100.0 41 .................................... AGGGTATCTCGAATCACCGCTAGGGTAGCACCGTTTTGAAG 257355 36 100.0 39 .................................... AACCGGTAACCCTAGAGGTCACTGGTGGTTCAACGTATC 257430 36 100.0 35 .................................... ATTTAAAAGAGGAAACTGTTAAAGTAGTTTCTAAA 257501 36 100.0 37 .................................... GAGACATCGTAATTGTCTCAAATCTTTATCGCTCCTC 257574 36 100.0 37 .................................... GAGATAGTTACAAACCAGTAACCCTAGAGGTCCGTGG 257647 36 100.0 37 .................................... CATAAGAGTTCCTACAGGATCATATCCATAATCGTTG 257720 36 100.0 37 .................................... AAAGAAATCAAAGCAGCGTGGAAACGCGCTGCGGTAG 257793 36 100.0 39 .................................... CAGAACGCCATCACTATCTGTCCGACGGCGGTACGGTTC 257868 36 100.0 34 .................................... CCAATGAGTTTTCCAACATTCCCAAACTCATTGG 257938 36 100.0 35 .................................... CTTTTGTTTTTATTAGTAGCTTATTTTAGCCATTT 258009 36 100.0 36 .................................... AGAGGTAGTAGGGGAGGATGGGGCTGCTAAGTTAAA 258081 36 100.0 38 .................................... AAGATCGCCGCAAAAACTTCCCAAAGCTTACTTGCCGA 258155 36 100.0 40 .................................... TAGCCCAGTGGAACAATTATTCAAACTGCTATTCAAACTG 258231 36 100.0 37 .................................... CTTATTCTGGTTTAATAATAAGAACCTCCTCTTCTAA 258304 36 100.0 42 .................................... GTCAAATACTCAATGCCCGAGTACGGGTGGGATGAGGCAGAG 258382 36 100.0 40 .................................... TGCTGCTGGTGTCGCAATTGCGGTAGTCTCAGACGCAAGT 258458 36 100.0 38 .................................... TTCCTAGACTTATACCAGTCTGTATTGCCTGGTATCAT 258532 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 26 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : GACTACGATCAATGGTGATCGATGAAACTGCTGTTGTCGAGACTCCCGCTAATGTCAGCACTTTGCCAATAATGCTACATTTGGCACTAACTTTCTGCATCAGTGTCAAGCAACTCCAGCATCTCATTTTGGTGCCTTATTAGTATGTTATTCTGCTTCTTGATATTTTCAAGGTGAGCTACTATTCTTTCCAAATCAGTGTCAAGCAACTCCAGCATCTCATTTTGGTGTCTTATTAGTATGTTATTCTGCTTCTTGATATCTTCAAGGTGAGCTACTATTCTTTCCAATATCATCACAATATGATTAATTCTGAACACCCATCTCACTATGGCGACTTGGATTATAAGGACTACTATTACTATTACTATAAAAAAATGTAAATAACTTCCATATTATTTTGTGTGTAATATTACCAAGATTCAATAGTTTAACATTGTCATTGGTTTATACATGTTTCTATTCAATCAGTGTCCCCAGCGAGTGAGGTCTACTCTATT # Right flank : TCCCTCCATTTTAAGCCCTTGCCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTCTTTTTCACCTCCACCACCCTGAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAGTTCCTTCGTTAATTACTAGTTTTAGTGTCATTTGTATTACTTTACTTTTTAAATATACTTGGTTAATAAAATTTAAAATAAATCCTGGAATCCCCTATTATAGAGGATTTATAGAATAATAGTCAATATTGTAGAACCAACAATATAATGTAACATTTAAATTTTCTAATGTCAGTCGTTTATTAGAGATTTTAGAGAACAAATCCAGCCAGGTTCTAGATGAGATGAAAAAACTATCCGAACCACTGTTTTTATTAACACTACTACTGGCGATCGCATGAGATTCAAAATACCCAATAGGCATCAAGTATAAAGTTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 159046-157142 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLJ01000001.1 Cylindrospermopsis raciborskii GIHE 2018 C1_1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 159045 36 100.0 38 .................................... AAAACAAGACGCAACCGCGTTGAGAAACAAGAAAAGGT 158971 36 100.0 42 .................................... ACCAATACCAACACCAACACCAACACCAACACCATGAACAAC 158893 36 100.0 36 .................................... AAAAAAATATTAAATTTTAAAATTGGTAGCTTTTTG 158821 36 100.0 38 .................................... CAGTGGAACAATTATTCAAACAGCCGCCCCGGCGAAGT 158747 36 100.0 41 .................................... TGACTGGCTGGAATCGACATAGTCCCAGCATAGTTTAAGTA 158670 36 100.0 37 .................................... TTCATATCTTTGAGGTAGATCCTCAAGGCAATAAATC 158597 36 100.0 50 .................................... TGGCACGTGTTCCCCGCTGGTATGTCTATCTGTTTTGCTAAACCAGATGA 158511 36 100.0 35 .................................... ATTGGTTATCAAGAACTCTAACATTTTGTTATAAG 158440 36 100.0 40 .................................... CATGAACACCAACAACAGAAATAACACCATGAACACCAAT 158364 36 100.0 41 .................................... TTTAACACTTAACGAGCGCTTTCCCCTAATAACCGGCATAC 158287 36 100.0 36 .................................... TTTAAATCAGATAATTCACAGATTTTGAAGAAGTCG 158215 36 100.0 37 .................................... GTCAGCATTAAAGCTGACTTCGATCCTAGTTTTAAGA 158142 36 100.0 35 .................................... TTATCTATTCTGTGTTGTTTCCTTAGTTCTGATTG 158071 36 100.0 40 .................................... TAGAAGAGTGGCTACAATGGAACTACGCGGATGTAAGCGA 157995 36 100.0 42 .................................... TCCCTATGGCGTGACCCGCAAGGGCGCGTAATAGGGTGGGCA 157917 36 100.0 39 .................................... GCGATTTTCTGCTTGTACGTTTTTGTTCTTCTGGGTGTA 157842 36 100.0 38 .................................... TTGCTTGGTAGCGTTTACTGCTACTCCTAATACCTTTC 157768 36 100.0 38 .................................... CTAGAGGCAGCAAAAAACGAGGTCAACAACGCAAATCC 157694 36 100.0 37 .................................... GCCCTCCTCTGTGCAGTTGACCCAATCACTGCTACTT 157621 36 100.0 36 .................................... GTATTAGTATAATAAGAGAAGGGCTAGGCAAAGGAA 157549 36 100.0 37 .................................... TAAAACAATATATACCCACAATGAAAGAGGCTGTTGA 157476 36 100.0 39 .................................... CCACCCATTGGAACGACGGGTGCTTTTCCAGCTAAGTAC 157401 36 100.0 40 .................................... TTCAAGAGTGAACCTGTTTACCAAAACATGTTTGAACTCA 157325 36 100.0 38 .................................... TTAGACTTAGTAGGGTTAATTATTAGGAGATACGGTTT 157251 36 100.0 38 .................................... CTACATTCTTTTTATACCCATTATACTTATTGACCAGA 157177 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 26 36 100.0 39 GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : GCAGCATTAATTTGTTTTGTTCCATAGGTATCCGCCACCCATCTAAATACAGAGCTGGTAAGTTCCAACTACCTGTTAAATCTCCTGCTAAATTAGGTGTATCCGGAGTTATTGCTGTTAAGATATTCAACAATTTTTCTACGGATTTGGTTTTAGCTACTTTGTCATTCCGAGAAATAATAAAATGTCCACATAATAAATGGGAAACACCATATATATCACCATTGACTGTGACTCCTTGTAAACCTGCAGGATACCAATCTTTGATATTTTCAGGTTTATTCCATGTTTTGACTACATTTGCTTTGACTAAATCACCTAATAATAATGTATCTACTTCAACGAGATCATAACCATCTTGTTTGCTAGGGTTGGTTAACCATTGTTTTAAAGTGTCTATGTCATAAAATCCTTCTTCTTCTGGGTTGAGAGGTTTTAATACTAAGTCAATGTTGGGATTTTGGGTTTCAAACTCACTTTCAATTCTGTATCCCTCAGTT # Right flank : CCCTCCATTTTAACACCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTGCTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCTATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 362265-365105 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLJ01000001.1 Cylindrospermopsis raciborskii GIHE 2018 C1_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 362265 36 100.0 38 .................................... GAACCTCCTGTAGTCTTACAAGTTGGTACTTACTGCTT 362339 36 100.0 38 .................................... TCCGGTTTCATTCTCCAGGCGACGAAGCCTGGTTTAAG 362413 36 100.0 40 .................................... ATGAGCGATTGCAACCACTTGGCTGGCGCGCACCCAGCCC 362489 36 100.0 35 .................................... GGCTTTAACAAAGACGGAGTTTTAGCTATTTTGCA 362560 36 100.0 36 .................................... ATCAAAGACGAGCCAGGATCTTGAAACAATGTTGGA 362632 36 100.0 39 .................................... CGCCAGGTTGATTTTATCGAGGAGAGTAAGGATCTAGCT 362707 36 100.0 39 .................................... TAGGGCGTCCTTCCGACGCTGGGAGACAGCAGCCATAAA 362782 36 100.0 37 .................................... ACCTTTAGTGCCTACCAAATGCGTTATAGGGATGTTT 362855 36 100.0 35 .................................... AAAAATTATTTAAATATTAGTACGGTAGTTCCTCC 362926 36 100.0 40 .................................... TTTTATTTTCAAGGAATAGTGTATACACACTATCCACGCA 363002 36 100.0 36 .................................... CTATACTTTTACTGTTGCTGAATCGTTGCCCATACT 363074 36 100.0 40 .................................... AAGGGCCTCCTCCAGCATCTCATCAAAGCGAGGATCGTCC 363150 36 100.0 35 .................................... ACAATGCGTCTGTATGACTGCACCGTATTGGTGCT 363221 36 100.0 41 .................................... GCTCTGGGTCTTCTGCCAGAACTAGCTTAATTGCGGAATTA 363298 36 100.0 38 .................................... TTCCTGGAAAAACACCTAATTAACGCTAGGTGTTTTTT 363372 36 100.0 36 .................................... GTCTTGATTTGCAAGACTTTCAGGATTTTAAAAATC 363444 36 100.0 36 .................................... GGAGAGGTGAGCCAGACAGGAGAGGTCTATTCCCTC 363516 36 100.0 41 .................................... CCGAAAGGTATGAAGGCCCAAGACCACTTACCCCTCATACC 363593 36 100.0 37 .................................... TTTTAGTCATTAAGCCTTGGTAAAATAGTTTTATGCT 363666 36 100.0 37 .................................... CATGTTATCAATGGTCTAAGGAAGACATCAAGAAAGT 363739 36 100.0 36 .................................... CTGCTATGCAGAGGTTCCTTGTTGAGGAAGTTTCAG C [363750] 363812 36 100.0 39 .................................... GAGCTGGAGCTGGAGCTGGGATTGGAGCTGGAATTGGAG 363887 36 100.0 37 .................................... GGAGAGTTGTCAACTATACTAATTAGCTCATCAATAC 363960 36 100.0 40 .................................... CTTTTAACTATGGATACCATTACCTACACCTCTTCCTCTC 364036 36 100.0 40 .................................... TATCGAGGAGAGTAAGGATCTAGCTCTCCGCGAGAAACAA 364112 36 100.0 36 .................................... ATCTTAGGTGGTTAGACCCCATTAGAATGGCTTTAA 364184 36 100.0 35 .................................... TTTGGGTTTGTCAAGTGTTTTGAGGAAGAATTTTA 364255 36 100.0 37 .................................... GATCGCTAAATTTTTCCGTGCGATCGCCAAATTAGAT 364328 36 100.0 37 .................................... TCTTTATGTTGCATTTCCTCAATAAAGTCATTGTCAT 364401 36 100.0 38 .................................... TGTATAAAGATTTTTTGTATACCTCTAAAAGAGTAGAT 364475 36 100.0 35 .................................... AATCAAAAGAAAAAAGCGATGAGAGATTTCTCCAG 364546 36 100.0 36 .................................... GGGATCTAAGCCCCTATCATGAGCGATTGCAACCAC 364618 36 100.0 35 .................................... TGGAAAACGGCAGTAACCACCCGGGATCTCGGAAC 364689 36 100.0 39 .................................... TTTTTAACGTGTAAATTAAGTGATTGATGATAATTTTAT 364764 36 100.0 37 .................................... GTTAATGCTACGTCATTACTATGGTAAACCCGGGTTT 364837 36 100.0 48 .................................... AATAAAACCGCCCTCATAGTGGTCTTCCCATTTATAGGGAATATCTAC 364921 36 100.0 38 .................................... TGTAGTATTCCAAATCGCTTGGGGGTTCTATTTCATTG 364995 36 97.2 39 ...............................C.... CCGTCTAAAATGACGCAACAACAGAATAAACTTGTAGAT 365070 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 39 36 99.9 38 GTACGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TAGATTTTATCCTTTATCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGCTAGGTAAAGTTTTAATCTATATGATATCTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACCAGTTATTTGAGCATGAATCAGTTATAATAGAATAAATGGAAGGATTAATTAAGGATTAGTATTGAGATTATTGATTAATGGTTAAAGTGATATTAAAGACAATAAATTCAGTGATTAACGAAGGGAATGCGAAGGTCAGCAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTGGACATCAGTCAGGGTAAGGGTTTAAAATGGAGGG # Right flank : CTCTTCCTATTACCACAGAAGTAATGTTAAAAGCAGCAGAATTATGGGCTGAAGCGAGAAATAAAGGCTTTAGATGGTGATGTTATTTTAGCGGCTCAATCTATTTTTTTTAGTTGCTAATTATGGACATGAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTACTGATGCTAGGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTTCTGCGCTAAAATATCCTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 1110896-1108734 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLJ01000001.1 Cylindrospermopsis raciborskii GIHE 2018 C1_1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1110895 36 100.0 36 .................................... AATCTCAGAGGAAGTCCTCTCTGGGATTGCCCTTAA 1110823 36 100.0 39 .................................... TTCAGGAATATCTGCATAGTTCCATTGCAGCCATTCTAA 1110748 36 100.0 37 .................................... TATTTTAAAAAAATTTCTAAAAATATTTTTGACTTTT 1110675 36 100.0 39 .................................... AATAACTGAATACTCAGCGAGAGAGTTTCTTCAGCATCT 1110600 36 100.0 37 .................................... GAGGTAATCCTCGCCTGTGTAAAACCTACAGTCGAAA 1110527 36 100.0 39 .................................... GTAATTTTAACTCTTGACCATAGCTGATAATTGGTGGTT 1110452 36 100.0 37 .................................... TGGACTCAGTTAAGAATGCTTCAAATATAGAAGTATT 1110379 36 100.0 40 .................................... CATTTTGAGAAGTCTCCCATTTTGCCTACGCTATCTTTGC 1110303 36 100.0 38 .................................... TTTTTTAAATCCTCTATGTCTGGACCCCAGACTACTAT 1110229 36 100.0 37 .................................... CAATTTTTATATGAAATGATTGACCCCGCATTTCTAG 1110156 36 100.0 39 .................................... ATTAACCCTGCACCGAATAAAGCGACCATACCACCGGTG 1110081 36 100.0 39 .................................... CAGAGCTTTGTAAATTTTTGAGCTTTACTATACCTTGCT 1110006 36 100.0 41 .................................... CTCTACAGGCTCTAGCCTAAACCCTTCATCCTCGTAAATGA 1109929 36 100.0 42 .................................... GTAAACACAACAACCAATAAACAAGAGGAAAGACCAATGAAA 1109851 36 100.0 37 .................................... TTACAGGTTTATAATTATCTTGATCCTCAACAGGCAA 1109778 36 97.2 37 C................................... ATAATAAGGACCTCCATCTCTTCTAATGGGTGTTTAA 1109705 36 100.0 38 .................................... TTGTACCTTTGGACAGAGGTAGAGGTATCATAGTAGTC 1109631 36 100.0 39 .................................... TCTAAAACTTAGCGGGAAAGATATAGAACGCGCTAACCT 1109556 36 100.0 34 .................................... AGTTAGAGTTAGGATCATCTAGATTATCTAATAC 1109486 36 100.0 36 .................................... AACATAGCTGCCTCCTTCCGGCGCTAACATCATCTA 1109414 36 100.0 37 .................................... ATTAATAAAGTCATCTATGCAAGCGTCTTCATCTATC 1109341 36 100.0 38 .................................... TCCGGTATGGAGGAGGTTACCACCACCTGCTCCTCAGA 1109267 36 100.0 38 .................................... GCCTGTGTAATACCGACAATCGAAGCAAGACATGGATT 1109193 36 100.0 37 .................................... GCTTTGGATTTAGGAACAAAACTACTAGAAGCAGTAA 1109120 36 100.0 37 .................................... TTGACTTTTAATCCCAGGCTTTCTGCCTGGTTTATTT 1109047 36 100.0 37 .................................... AGTTTTACAAAGTAAAGGTTTAGTAAGAATGGTAGAT 1108974 36 100.0 22 .................................... TGGTGGTGTTTGTGTTCATGCT Deletion [1108917] 1108916 36 100.0 38 .................................... TAGCCGTTTCCATGGGGTTGGAAAAATCACTTCTAGCA 1108842 36 100.0 37 .................................... TTGACTGACTAGACTTGACTTGACTGACTAGACTTGA 1108769 36 91.7 0 ...............C..........TG........ | ========== ====== ====== ====== ==================================== ========================================== ================== 30 36 99.6 37 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : ATAAACTTTATACTTGATGCCTATTGGGTATTTTGAATCTCATGCGATCGCCAGTAGTAGTGTTAATAAAAACAGTGGTTCGGATAGTTTTTCATCTCATCTAGAACCTGGCTGGATTTGTTCTCTAAAATCTCCAATAAACGACTGACATTAGAAAATTTAAATGTTACATTATGTTGTTGGTTCTACAATATTGACTATTATTCTATAAATTCTCTATAATAGGGGGATTCCAGGATTTATTTTAAATTTTATTAACCAAGTATATTTAAAAAGTAAAGTAATACAAATGACACTAAAACTAGTAATTAACGAAGGAACTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGGGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAAGAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : ATCCCTAATACTAGATCTACTGCATTCTCTATTGTCTGAAACTACTTCCCTCAAAGGAAGTAGAACTAATTAATGGAAAGATCTAAATGGTTCAGGTGGGCGATTGCGAAGCACTCCCTACGGGAGATCGCACTTAACAGATTTTACTTGTAGCTTGATACGGACACAGTAGTTCGGATAGGTTTTGCATATAGTTGGTTTCTGCTGTCGCAAAGCGATCGCAAGCTAAAAATAATGAAGGGGAACAGAAGGAAACAGATACCAGCAATGACCCATAACACCTTGTTCAGAGGTGACTGGGTTGAGCAAAGTATTGCGAGAACAGACAAGATATGTGAGATATTACTTTGACTCTAACCAAATGAGTGGGAGATTTTTGTATTTTTCATTTATGCTTGACAAGTCGCAAGAGTTTACAAAAATTATTAATTATTTTCTGTAAACCTATTGCATATCTGTTCAAGTAGTTTTATAATTAGAAAAAAGTAAGGTGATCTCTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //