Array 1 98-905 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXU01000176.1 Pseudoalteromonas luteoviolacea S4047-1 contig_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 98 28 100.0 32 ............................ GTTGAAGAAATGGGCGATTTAAGCCGTCACTC 158 28 100.0 32 ............................ GCCCATCTAGCACCAGCCTAAAAATGTATTCA 218 28 100.0 32 ............................ TCTGCAATCTCGAACTGCTCGTGTCCATGCTC 278 28 100.0 32 ............................ TAAATAATCCAATTCTGTATCCGTTGCCTTGG 338 28 100.0 32 ............................ AGATACCCCTGCAAACTCGCCATTCATTTCGA 398 28 100.0 32 ............................ ATTATGCGATCCCCAGTATTTGGTTCTTAATT 458 28 100.0 32 ............................ ATTCTTGGCACTAGCACACCATGCACACACAA 518 28 100.0 32 ............................ AATAACGCGACCACAATCACCGTTGCAATTGC 578 28 100.0 32 ............................ GTTATCCAGCTCAGTTGTCGCTGCTTGCTGCG 638 28 100.0 32 ............................ ACTTCGAGTCTTTGCTGTCTTGCATATCTCGT 698 28 100.0 32 ............................ ACAAAAGGATAAGCAAAACGCAGTAACCACTT 758 28 100.0 32 ............................ ATAAAATCATGCACATTCATTCATATGGCATT 818 28 100.0 32 ............................ GTTCACAAATACATTCGTAACGTCTGTCAGTT 878 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 CTTTACTGCCGAGCAGGCAGCTTAGAAA # Left flank : AATACAGTAGGTTGTGATTAGTTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTGTCTTTTTTGATTTACTCTATAC # Right flank : AACTGGGTTTATAGTCCGACAATCACCAAAATCTTTACTGCCGAGCAGGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGAGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1022-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXU01000040.1 Pseudoalteromonas luteoviolacea S4047-1 contig_134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1021 28 100.0 32 ............................ GTAGTAATCCCACCTGCACCTTTAACATCAAG 961 28 100.0 32 ............................ AGGATATATCAGCAGATTTGCGTGACGCGAAC 901 28 100.0 32 ............................ AGTAGAGAAACAGACCCATGCTGTGCGATTCT 841 28 100.0 32 ............................ TAATTGTTGTGTTTGTGCCGTACCAAATTCGA 781 28 100.0 32 ............................ AGACAGCTCAATTCAAAAGTGGAAGACTTTGG 721 28 100.0 33 ............................ TCCGCTAAATGGACAGTAAGTTCCTTTTGATAT 660 28 100.0 32 ............................ GGTTAAATGGTTTTCAAGTAAGATGGAGGGCG 600 28 100.0 32 ............................ ATAAGGGAAATTGACCAGATAATCATACAGAC 540 28 100.0 32 ............................ TGTTGTATCAGCAACGAATGAAATGCTTGATA 480 28 100.0 32 ............................ TTTATTCTCTCAAGCACAAAAACCTATGTTGT 420 28 100.0 32 ............................ ACATGACAAATTCACTGGTTTTATTCCAATAG 360 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 CTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATACAGTAGGTTGTGATTAGCTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTATCTTTTTTGATTTACTCTAT # Right flank : ATTTAACAGTCCATGGTCGTTAGCGGCTTTCAACTCCGTGTTGGAAATATTCCGGTTCACTGCCCTAAGGCAGTTTAATGCATCCGTGATAAAGTGTTGGTCTAACATGGAGTTGCTTGTGCAATGCAGTGACAATGGATCCTGATATTCATGAGGATGACGAGTGTAAGATAGTGGTTTTTTCCTCAACAGATTGTTGTAACTTCACTTTTTTCATTTATTCTTATTTTACTGCCGTGCAGGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTACAACTCTGTACTAGCTTTGTACACTATTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1492-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXU01000079.1 Pseudoalteromonas luteoviolacea S4047-1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================== ================== 1491 28 100.0 32 ............................ GAAGCGGGTGTGATTGTGATAAGCCGTGTCAC 1431 28 100.0 32 ............................ AGAAGCATCCCCTTGCTCTAAAGATTCTAACG 1371 28 100.0 33 ............................ GTTGAAATATGGCAAGCAACTTTTCTAAACCCA 1310 28 100.0 32 ............................ GTATCAAAAGCTGCCAAAAGAAGTTCAAGGTC 1250 28 100.0 32 ............................ TTAAAAGCTTCTATCAGTAACTTTGACATGGG 1190 28 100.0 32 ............................ TCGCGCATTAGTTACGGTCTTGCCTTCGCGTA 1130 28 100.0 32 ............................ GCTTATGGTTCGGCCAGTCTTTCGGTCAATGC 1070 28 100.0 32 ............................ AGCATGTCATCAGACGAAGCCTTGGGGCTTTT 1010 28 100.0 32 ............................ TAGCAAATACAAACGCACAAATTAAGCATGGT 950 28 100.0 32 ............................ AATTTCTTCTGCAGTTCATCTGCTAGAACCGT 890 28 100.0 32 ............................ AACATGAGCTGGATTCAACTTGATGATGCCGT 830 28 100.0 32 ............................ AATCAAGGTAAACAATGACTGCCAGCGCGAGT 770 28 100.0 32 ............................ AAAATTAAAGAAGAACACGAGAACATTATTGT 710 28 100.0 32 ............................ TGACAGTCCATTCAAAGCATATGGAGATGTAC 650 28 100.0 32 ............................ AAACTGTTTGACCATGGTACAACTGCATGTGC 590 28 100.0 32 ............................ TAACAAAAGAACTGCAGGAGTTAAAGGAAAGC 530 28 100.0 32 ............................ TTTGCCGTCTCCGTTCATATCGCTGTCTTGAT 470 28 89.3 106 .........................GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCCCAGTATTGGAACTATTCCG 336 28 85.7 106 ............G............GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCCATGTTGGAAAAATTCCG 202 28 96.4 32 ............G............... ACATAACTAAAATGCAGTCGTCTGCTGCAATG 142 28 85.7 0 ....................G....GTG | ========== ====== ====== ====== ============================ ========================================================================================================== ================== 21 28 98.0 40 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGACATAGACTACTCAAGGAGAAATCATGAAAAAAGTACTACTCGCTGCGGTTAGTTTTTTAGGAATGAGCGTAGCAGCTATGGCGGCAGACACACAATCGACTACTGAAAATCAAACTTTAAAAGTGGATGGCGTTACATCTGCCACATATCCAACGACCCCAACTATTTTAGATCAATTGATCCCAGAAAATGCGTGTCAGGCTCGTTGCTTGTATGAATATGAAGCCTGTAGTAAGTGGGCACCACCTTGGACAGATTGTGAATACTATGTTGAGCGTTGCTTGAGAAATTGCGCATCAAAATAATAGGCAATTTTAAAGGTCGGTAGAGCGGCCTTTTTTGTTTAGCCAGCAGGGTATTAAAAACCCTTTTTATTTTTGTTGAACAGTAGAGTATTTAAAATCAATAAGTTATAAACCACCTAAAAAAGAAGGTTTTTTTTACATTATTTTGTTAGGTGTTTGTATTCAAATGTTTTTGTGTTAGAAATTTATA # Right flank : GATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCTGTAATAGCTTTGTACACTATTTCAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53-1657 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXU01000057.1 Pseudoalteromonas luteoviolacea S4047-1 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================ ================== 53 28 92.9 32 ...........AG............... GGGATGAATCACTTGCCGTTCCAAACCTAAAT 113 28 92.9 32 ...........AG............... GTATAAGCGCGCAATGTCTAGCGCGCTCAATT 173 28 100.0 32 ............................ GATGGTGGCCAAAGGCATTGCGATGGTCGGCA 233 28 100.0 32 ............................ TGATGTGGGCAGCACCACACAAGGCACTTGGC 293 28 100.0 32 ............................ TAAAAATAGACCCGATCTACAGATTTTTAGAG 353 28 100.0 32 ............................ TATTTCTGGGGCGTCATGCACGCTTTGGATGA 413 28 100.0 32 ............................ GTGATGAACAAATTAAGGGGCTTTTAAACTTG 473 28 96.4 32 ............C............... TTCTTAAATCATGATAACGCAAGTCTTCAATC 533 28 100.0 32 ............................ GCTGCACGCGTTCATGTTGATAATGGCGCGAA 593 28 100.0 32 ............................ ATCACCAACTACTATGAAGCGCGCCAAATGGC 653 28 100.0 32 ............................ CAGCGCTTTACTTATGCCAGTGAATGCGCTGT 713 28 100.0 32 ............................ GCTATTACTAGATGTTCTCAAATCAAACAGCT 773 28 100.0 32 ............................ ATTCTCGAACTAACTCAATCCAACCTTCAGTA 833 28 96.4 32 .........T.................. ATAATGTGACTAAGCTTGGAAAAGCTATAAAT 893 28 100.0 32 ............................ AGTTCAACCAAGAAAAAGCGCAAGCGTTCGCA 953 28 96.4 32 ...C........................ ATCATGGCCCGTGCCTATCTTCATTCTATTTT 1013 28 100.0 32 ............................ TACAAAACACGGCAAAGATAATCTACTCCGAG 1073 28 100.0 32 ............................ TGCATAAACGTGTCCCGTTTGTGATTGAGTTA 1133 28 100.0 32 ............................ TAACAGAGCAGACGAACTTATACAGCAAATGA 1193 28 100.0 32 ............................ TATGCACGTATTTGCACAACGTATGCAAAACG 1253 28 100.0 32 ............................ AGTAACAAGCAAAGTATTAAGCACTTAGATGC 1313 28 100.0 32 ............................ TGAATATAAATGGTCAAGAGGAATAGCAAGAG 1373 28 100.0 32 ............................ TTTGGCAATTATTGCCTCAACGATATTAGCCT 1433 28 92.9 33 ...........AG............... CGTGCAGCATTCAAAACACTGATGACATACCGA 1494 28 82.1 108 ...........AG............GTG ATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTTCAACTCTGTACTAGCTTTGTACATTC 1630 28 71.4 0 ...C...A..C.........T...ACGT | ========== ====== ====== ====== ============================ ============================================================================================================ ================== 26 28 97.0 35 CTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGAGCAGGCAGCTTAGAAACCGCGTGTTGCTTGGGCAAAGCGAAAACAGCAC # Right flank : TATTCGTACAGAATTGTTAGGCCTAACGAAGAGCTGCTTATGCAAAGCAGTAAAACTGGATCCTGATTTTCATCAGGATGACGGCGCGTAGAGAGGCGTTGTTAAAGCCGCTTTAGTCATGAATGTTCGATGTAACCAAGCTCCGTAGATGGATGTCAGCTCCGTGCTACCTACACTCACTTACAATGCCATATAAGCACGTACCCACAAGTCTACACTTTCTCACCCCCGTCATTCCGAGCTTGCCTCGGAAACCATTGGCTTTTTCGATGAGAGGCCATTAATAAAGCTTGTAAACATAATTTCTCTTTAAGCCGAGCATCATGGAAATCGAGATCGATTCTCACTGGTAGGTTTGTGAAAAATGGTATTTATTACGGTGAATACAGCCTGCAATAACACAAGAAAACTGACAGATAACAAGCCTAAGAAAAATAGAGCTATGTTTAACATTAATGTTATTAAAGCGCCAATGATTGGTGCGCCAACTATTGCAGTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12197-13871 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXU01000057.1 Pseudoalteromonas luteoviolacea S4047-1 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 12197 28 100.0 32 ............................ AAAGTGTCACGCCGTTTTATCTTACATGCCAC 12257 28 100.0 32 ............................ CTAATAGCAGTGAGTTTAGAGACAGTGAAATT 12317 28 100.0 32 ............................ GCTAGATGCTGAAATATCAAGCTATACAATGG 12377 28 100.0 32 ............................ TACGCGATAAGGCGTCTCTTATGCGAACGAGC 12437 28 100.0 32 ............................ GTTTGCGCCAGCTGCCTGACGAGCAAATTTGC 12497 28 100.0 32 ............................ AATTATCTGTGGAATACCAGAAACAACACCGT 12557 28 100.0 32 ............................ ACTAGTAACCGAGTCACCTAAAACTGTACTTT 12617 28 100.0 32 ............................ TGTTAGCACTGCAAAAACGGTGTTGCATTTGA 12677 28 100.0 32 ............................ CTAACTCACTACTATCACGCCCAGCGTTCTCT 12737 28 100.0 32 ............................ GAACTGAACGAAAAGCAGTTGGCCGATCTCAT 12797 28 100.0 32 ............................ TTTAAGACTTACTTTTGCTTTCACAAAGTTAC 12857 28 100.0 32 ............................ TAAGTCCATAACTATCGTGTATGCTCGGCCTA 12917 28 100.0 32 ............................ CCACGACATTGGAGATATGCCAAGTTAAAACT 12977 28 100.0 32 ............................ TACTAAGCCCATTTTGATGAGTACAGGCACGG 13037 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 13097 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 13157 28 100.0 32 ............................ CTAAAGATAAAGTACTCAAAAGTGTTAGCTAC 13217 28 100.0 32 ............................ TAACATTTTTGTGGGTGAACTGATCAGTCACC 13277 28 100.0 32 ............................ CCACATGCCTTGCATCTGTTGAAACGTATCTT 13337 28 96.4 32 ..................A......... GTTTACTGAATATACTTACGACACGTTTAGTA 13397 28 89.3 32 ...........CG.....A......... GTGGGGCGTAACTGGGACTGGAGCTATCAACA 13457 28 89.3 32 ...........CG.....A......... TATCAGCAAACAGCTAAACGACGAGCATAGAT 13517 28 89.3 32 ...........CG.....A......... AAAACATCAATTTCTTTTGCAGTGAGGTTCAT 13577 28 89.3 32 ...........CG.....A......... TGCCAGTGGACGATTTAAAAAGCATCTTTTAT 13637 28 89.3 32 ...........CG.....A......... CAACTCCCAAGCCAGAGTGCCGCATTGCAATA 13697 28 75.0 119 ..........GA.T....A......GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGTAAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCTCCGTGTTGGAAATATTCCG 13844 28 71.4 0 G....T....CC......A.T...TT.. | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 27 28 95.6 35 CTTCACTGCCATACAGGCTGCTTAGAAA # Left flank : TACCAGATGATGTCAGCTATGTGAGTTTCACACGAAAAAACGTTAAAAGCCCTACTAGGATTGAGAAAGATATGGAAGAGCGTGCTAAGCGGCGAGCACAAAAAAGTGGCAAAACGTTTGATGAATGCATGACAGAGCTCGCTGAGACTAAACCTGGTCCATCCGATTTGCCTTTTATCTTTTTGCATAGTCAACAGACTAAGACTCGAACACCAGACACAAATAGTAAATACCCACTCTTTATCACCATGGAAGGACGCGAGGGTAATTCACATGGCACATTTGACTGTTACGGGTTGAACGCGAAGGCAAATGATGAAAATGTATTTGGGTGCGTACCTCAGTTCTAATAAATAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATCTGCATAAAATACAACGAGTTGCGATAGGCTGTTTTTAATAAGGTAAAGCTAGGCTTTTTTACCTTAATAGTCTGTTGCATCTAGTCTTTTTTCATTTATTCTATA # Right flank : TGTATTCGTGATGAGTTGTTAGGTCTAACGTGGAGTTGCTTGTACACGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGGGTTTAAGATAGGTGTATGATTTTATCTAAGTAGTGCATTTTGTTATGCCTACTGAAAGCTACTGCCCCATAGGAAGTGTATTATTGTTAGCCGTGATGAGTCGTTAGGTCTAACGTGGAGCTGCTTGTGCACGCAGTGAAGCTGGATCCTGATATTCATCAGGATAACGGGTTTAAGATAGGAGTTTTGATTTTGCCTAAGTGGCGTAATTTACTATGTCTACTGTAAACTACTGCCATACAGGCAGCTTACAAATGCCGGAGTTGTTTCTACACACACTAAAACCTTTACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCACTGTCTCACTGTCTCACTGTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCATACAGGCTGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //