Array 1 73540-74027 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000012.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 73540 29 100.0 36 ............................. TTTTTAGTAGGATGTTTGAATTGGTGGTGGTCACCA 73605 29 100.0 37 ............................. CAGTATGGACACTTGCAAAAATATTTTACTTTTGAAT 73671 29 100.0 36 ............................. ATCTTTTATAACTAAATCTATAGAACTGTTGTTTGA 73736 29 100.0 36 ............................. GGACGTAACCGGCGGAGTTCCTTTTATGGAGAATGT 73801 29 100.0 38 ............................. ATGCTTTCCGCTGTGCTTCTTATAGCATTTTTAGTATT 73868 29 100.0 35 ............................. TGTTTATTTTTAATTTGAACCTCTGCTATTTCATC 73932 29 100.0 38 ............................. GAAGGTTTGACATTATCAGCATACTCGGTAACTATTTT 73999 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAAATATAAATAGTTTTGCAGTGTTCGATTTTTTGAACAAAATATGACTTAACACTTGAAATATAAGGCATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGG # Right flank : TAATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTCTTTTCTTCTTTTTAATTCTTCCATTATGAATACTGCTGCGACTATTAAATAGTTAACTTCTAAACCAATCGCTAAATCAACTATTGTTGTAACAGTAACATTTTTATAATCGCCCTTTTCTAACTTGGAAATATAACTTTTGTGATAGTTAATTTTTTCTGCAAGTTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAAATTAAATCACCTTTTAATATATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTATCTAGCTAGAGAAAATTTGAAAATTATATATTTAAATAAGCTTTGTAATTAAGTTTATATAAGTGTAAGAACTTTATTTCCAAAGATGGGAGGATGATTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4828-5121 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000022.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4828 29 93.1 38 ................G...T........ ACACCTCCAAACACTGCAATTTCTCCTGTTTTCAAAAC 4895 29 100.0 37 ............................. TCTTTTAAATCACTAAGTTGGTTTTCAATCCCATCAA 4961 29 100.0 37 ............................. TTGAATGACCATGAAATAATTAGTGTTTTTTATAAAA 5027 29 100.0 37 ............................. TTCGCAACTTATGATGGTGAAATGATTACATTAACAG 5093 29 89.7 0 ......T.........G...T........ | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 96.6 38 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : GAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTATTTTAGCTAGCTATATAGTTTACTTAATAAGTAAGTTATTTAGAAAACGTAAAAAACCACTCAAAGCGGGCACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCATAAATTCAAATAACTTTCAGTTATAGAACTCCACTCTACACCAAATAGATTGTAGTTCTTCTTGCTATTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCAATATTTGCGATAAATTGAAGTTTAACAGTTGCAATATAAGGTATTGAGGGTATGTGATAAGTGTTATCAATTGCACTACTCATGATTCACTGCAAATTTGAGAGAGGTGTGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAGCAAAAGATAGGAATGATAATTTTAAAACTCCAAACTTTTATATTAACAATGTGGAGAAAAACTAAATAGAAGAAAGAAGCACTTATTTTTGGTAGGTGCTTTTATTTTGCTCAAAATATTTTAAATCAATAGACTAAGTTCTTATTTTTAGATAGAATTATATTTGAATAAAGAATTTAATAGGGGGAGAGTTCATTATGTGGGGAAAATTTAAAAAATTAAGTTTGTTGAAGAAAATTTTAGTGATATTTTTAATATACTTTGTTGTATTTACAGTATCAATGATGATTCATCAAGCGATACGAGATTCAAAAAATAGAGATGAAGTAAATGAAGGAAATATTACAAAAGAAAATATAATTAGCGAAAGAGAAAAAGAAGATATTTATAAACAAGAGATGCAAGCAAAAGTAGACTCTATGATACCAGAAGACTTAAAAGATAAAACAACATATTATGTTAACATATTAAACCCAACAAAAGGTGAGGGATATA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 7606-8424 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000022.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7606 29 100.0 38 ............................. CTGTTAAATCTTTTAAAACTAAGCATGGTACTTGCTTC 7673 29 100.0 37 ............................. TTTTTATAGTTCTGGTATATAACATTTAACTTGTTGT 7739 29 100.0 37 ............................. TGGTTGGATCATATGAGAAATCTTACTATACAAAAGA 7805 29 100.0 37 ............................. GCAACAGAAGAATGTTTATACGTTGGGAAAACAGAGA 7871 29 100.0 37 ............................. TTCAGAAGTTTTTTTGACAATGTCGTTAAATTTTTCT 7937 29 100.0 36 ............................. AATAGCTCTTCCGCCTATTGTAGTTCAAGCAGTTAG 8002 29 100.0 36 ............................. TTTTTCTTTGTAGTACTACATTTATCTTTCTGTAGT 8067 29 100.0 37 ............................. GTTTGAGAACGCTGTATAAAGCTTGTAGCTAGTTCTT 8133 29 96.6 37 ...............A............. GTTGCATCATTAAATATTTTCCCTACAAACTCTTTTC 8199 29 93.1 37 A...........................T ACTAAATTAGAGGTCGAGAAGGCTATTGAATCAAAAG 8265 29 96.6 37 ............................T TATATGGTGCTTTCCAGTCTTGTGGTTTTACAGGTTC 8331 29 96.6 37 ............................T GCGTTTAGGAATATGACAGCATCTATTAATATGACAA 8397 28 86.2 0 ....................-.CT....A | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 97.6 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGGAGAAAAGAAGAATTATCATGTGGTTTATAAAATTGAGTAAATTCTATTGTATTAAATAATATATTTTAGTTTATTTTGGGGGGATTAATACAATGGAAATTTTAAATATAACACTTAGTCCAAAGGAAATTGAAATCTATTTGATGTGGACAAAATTAGAAGAAATAAAAGCATTTGATGTTGAACTTTATAACAAAATTGCTGATACAATAAATGAACTTTATGAGAAACAACAAGGGAGAGAAAATAATTAAATAATATAGATAAAGCACTTGAATATTCTACTGTTTCAAGTGCTTTGTTTGTTAAAAAATGGTATAATAAAAATATAGGAATTTTGCAGTGTTCGATTTTTCTACTTAAGTATAGTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTGAGAAAGTTATATGTGTGTAAGTCTTGGAAATACACAATTTATTTTGGG # Right flank : ATTAAAAATAATTAAAAAATACTTGCTTATAGTAGGTGTTTTTTTAATTGAAAGGAAGTGATTATAATGTAAAAATTTTACGTATATAGTATAATTATCCTATAAAATATTCTGTGGGGTGATTGTTGTGTTTTGTTCAAACTGTGGTTATGAGATAATTGGCGCAGGCAAATTTTGCTCAAATTGTGGGACACCTGCATTAGCAGATACAGTTGATAATGGTGATTTATTTATAAGTATTGATGAAAAAAAAATAAATATGAATGATATTTATAAAAAAACTAATGGCGATAAAGTTTTAGCTCTTGATATTGTGATGGAATTATCAGAATTAAATATAAAAGAGTGTAAAAAACTTGTATATCCAGCCTTTGAAGAATTAAATAAAAAAATAAATATTGAAGAGAAAAAAGATGAATTAAGAGAAGACAAGTATAAACAAACTAATGTACTTGAAGATGATAATGTTGCTCGTTGCCCTAGGTGTGGTTCTGTTTCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 110352-110907 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000002.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 110352 29 100.0 37 ............................. TAAGAAAGTGAACATCTATAGTGTAGATAAAGAGTTC 110418 29 100.0 37 ............................. AATAGAATGTTGAATGGTTTTAGTGATTTTGGAATTA 110484 29 100.0 37 ............................. TTATTTGTCCCAGCCAAATATATCATTTGGTGAACAT 110550 29 100.0 36 ............................. GTCTTTGGTACAATAATTCTTCTATTTAATAAGCCT 110615 29 100.0 37 ............................. GTTATATATAATCCAAATCAAGAATTATCAGATTATA 110681 29 100.0 37 ............................. TATGCTGATGGGAGTGGTTTTTTTACTTGTGCAGATT 110747 29 100.0 36 ............................. AATCCATAACCAATTTTTGCAGGTAATTGTCCAAAC 110812 29 100.0 38 ............................. TTTATAACCTTTAATTACACCTCCCATATCACCACCAC 110879 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTGACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGCTTCTTTATCCATATCATCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCCTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAACATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 434986-434760 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000002.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 434985 29 100.0 36 ............................. GTATGTTACAGCAGTAAAAAGACTGACAGGAACAAA 434920 29 100.0 37 ............................. AAACTTCGCGCTTTTCTAGTAAAAAGTTTTTCGGTGT 434854 29 100.0 37 ............................. TGGTAACAAAGTAACTAATAGTATATTGTTTATCTAT 434788 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAA # Left flank : AATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTATTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAACCTGAGAGTATCTATTCATAGTTATTTTTATACCTGTATGACCTAATCTTTCTGAAATGGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAACAGTTGAAATATAAGGCATTGAGAATGTATGATAAGTATTATCAATTGCACTATTGCACGTTCACTGCAATTTTAAGAGTATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGGTAATGTATATAAAAAAGAGTTAGAACTTGGAGAATATGGAGTATTAGGCTGGATCAATGAAGAAATATTAAAAGATGTTATGGGGGTAGAACATAATTAAAAATTATATCTGAAAGTGATTAGAAATTTTGAAGATGCTGAAAAAGTAAAAAAGAATACAACTCTGTTATGTCAACATTTTTGTTAATAGATTTAGATTATAAATACATAAAAGAAATGATGTTAAAGTTTAATTTATGGGATGATGAATTAAGTGAATTAGAAAGTACAGTAAAAGAAATAATGTTAGATTCAGAATGAAATATATATTAAAATAACTAGATACAATTTGGATAGCTAATGTTATGATTTATTTAAGAAAATAGCACAGTATTTTATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 381267-381689 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000003.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 381267 29 100.0 37 ............................. AAAGTTTAAACCCCCTTTTTAACAAATTTTTTAGTTT 381333 29 100.0 36 ............................. ATAATTGGAACATACAAAAAGGATTCAGACAAATAT 381398 29 100.0 37 ............................. TTTTAAAGTCTAAATGATGTCATTATTATATCATAAA 381464 29 100.0 36 ............................. TACTTTCTGAGAAGCTTGTATTTATAAGATTAGACC 381529 29 100.0 37 ............................. ATATATCGACCTTAAATTTCGTGGTTATATTTTCTTC 381595 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGGGTACAATCAAGAA 381661 29 72.4 0 ......C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTAAATGTCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTTAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 490061-490620 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000003.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 490061 29 100.0 37 ............................. ACTAGTTCGTCTAATGTAACGTCTAAATAGTCAGCTA 490127 29 100.0 38 ............................. GTGTCTATGAAAACAATCTCATCTAATGGAAGCTTTTT 490194 29 100.0 37 ............................. GTCATATTCTTCAGTTTACCTTTCGTTTGCTCTTTAG 490260 29 100.0 38 ............................. AGAAACCCCAATCGCGATAGGGCTATAGATATTTACAA 490327 29 100.0 37 ............................. CCAAAGTGTCCTCTAAAGACTTTTGTATATCCTTAAC 490393 29 100.0 37 ............................. ATACTCATAAATTACATATTCTTTTCCTTTATCATCA 490459 29 100.0 37 ............................. TGTAATAAGAATTTCGTTAGAAAATCTGTTTCTTTTA 490525 29 96.6 38 .......................T..... CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 490592 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.7 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATCTAAACTATGTTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTCTTGTTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAAGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGA # Right flank : TTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTATACATTTTTTCTGATTAAATAATATGATGCTATTGGTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCCAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTTATACTTTAACTCTAATTTATCTAAGGCTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATACCTTATTGTAGCACCTATTACAACTTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATGATGAGAATGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7634-7924 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000020.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 7634 29 100.0 37 ............................. GAATTAGTAGAGTACAAAAATTTAAAGTCAGAATTTA 7700 29 89.7 37 ..A............A............T TCAAATATAAAAGACTTTACATCTTTGCCATCGATTG 7766 29 75.9 37 ...............AA...C.C..G.GT CAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 7832 29 93.1 35 .............A..............T GCTGCAAAATTTTTTATTGTTATAGACATTGCCTG 7896 29 75.9 0 ....................AGAAA..CT | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 86.9 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : ATCATGTAATTTATAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATGAATATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGTGAAGAAAAATTTCAAGAATATGCAGAGATATTAAGAGGTATTCTTAGAGAACAAGAAGAGAGAAAAAATAAGTAAAATAATATAGATAAAGCACTTGAATATTCTACTGTTTCAAGTGCTTTGTTTGTTAAAAAATGGTATAATAAAAATATAGAAATTTTGCAGTGTTCGATTTTTCTACTTAAGTATAGTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTGAGAAAGTTATATGTGTGTAAGTCTTGGAAATACACAATTTATTTTGGG # Right flank : TAAATAGAAAAAAGAAAGCACTTACTTAAATAGTAGGTGCTTTTGTTATTCTTTGCTAGATAAAGTAACAAGTTCGTTAGGTGTACATTCAAGAACAAGACAAAGCTTTTCGAATAAATCTAATTTTATAGAACTTGTTTCATTGTTAGCTAATTTCATCATGTTGGGATAAGCTATACCTACTTCTTTAGCTAACCAATATCTAGTTTTGCCTCTTGAATCAAGCAATTTATCAATATTAAAATACATTTTTTCACCTCTTAAGTATATTATACACTGGTTATATAATGTTTGCAATATATAATATGCAAATAATATGATTATGTAATGTTGACATTATATAATGTGTACGATATAATATACTTAAGGAATAAAAAATAAGAGCCACTCGCCCCTACCAAGTTTGAGTAACTCTTATTGACATATACTACATATGCATTAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTAAGGAGTGTATTTTTATGAACAA # Questionable array : NO Score: 3.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 11059-11611 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000020.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 11059 29 100.0 37 ............................. ACAGAATATAGTTCTACAGGCGATATTACATCAGCTA 11125 29 100.0 37 ............................. CGGCTAGACATAGATTGTTCTATTTTTTTCTGTATAA 11191 29 100.0 36 ............................. TAAATCTGATACACCTCGAGCTATCACGCTTGCAGC 11256 29 100.0 35 ............................. TTGAAAATGTTATAAGCAGCATTTCCAAGTACATA 11320 29 100.0 37 ............................. TATCACTTAAAAAAGAACCCTCGCCTTTATAGATATT 11386 29 100.0 36 ............................. ATCACTTTTTCTCAAGCTCTCACAATGATGAAAAAT 11451 29 100.0 37 ............................. TAACTATGTTCCAAGCTCCTGCGAATACGTCATAAAT 11517 29 93.1 36 A.................T.......... GCGATATTTTTAAGCCTAGAAACCAATACAGAACTT G [11534] 11583 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 98.9 36 GTTATATAATGACTATGTAGTGTGTAAAC # Left flank : TTATACTTCTCAAACATGTTCAGAGTGTGGTCATGCAGATAAAGAAAACAGGGAAACACAGGCTAAATTTAAATGTTTAGAATGTGGATTTGAAGCTAATGCAGATTATAATGCTGCTAGAAATATAGCAAAAAGTGATAAATTTGTAAAATAAAATACAATAATATATGTACGGGTGATTTAGTGTAGATGGTAACATCTCCAAGATAAAACTTGCATCCGAAGGGTGAGGGTATAGATAAAACGCATAAGGTAGTATGCCAAATATGTGCTATAACCACTCGCTAAGCCGAAAAAACCTTAGTTTATGATGGCAACTAAGCACACTATTATATATAAAATGCAGTGAGCGAACTTTTACATTTACATACTTTAAGTAGTTGAAAATACTAGAGTGTAGCAATTATTTTTGAAATGTCAAAAAACACTACTGGTGGTTCACTGCAATATTTTGTAAATTACATAGACAAAAGCATTGCAATTACTGTATTATATTTGGG # Right flank : CTAACACTATGTGTATTTAAATTCAATATTTTGAAAGTATTATATTAATAAAAAAATAAATATTAAAATAAAACTAACACTTACTCAGGTAGGTGTTTTTTTATCGAAAGGATGTGATAATAATGTAAAAATTTTACTTATATAGTATAATAATCTTATAAAATTATACTGGGGGATATTATACTATGAACGATACATTAGAATATATATTTTGTAGTGAATGTGGCACGAAATGTCTGAAAGAAAGTAAATTTTGCAGTCAATGTGGAACAAAAATATTTGATATAAAAATTGCATATGAAAGTATCATTGAAGAAAAAGAATATGATTTAAAAGGTGTTAATTTACAACATGTAATGCAGGAAACAAGCTTTATAAAAGCATCCTCTATCAGAAGGTTGAAGGAATTAACTGGAATAGATTTAGAAGATTGTAGAAAAATATTAGAAGAACCATATCAAAAATATTATAATGAAAATTCTGATATGCTTGAAGAAAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATATAATGACTATGTAGTGTGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 250880-250456 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000004.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 250879 29 100.0 37 ............................. TTTTAATTTTATCTTTTATAGTATATTCTTTTTTTTG 250813 29 100.0 37 ............................. CATTTAATCTATTAATATCATCAGATATTAATTCTGA 250747 29 100.0 37 ............................. TCTGTTGTTTCTTTTGATTGTAATATTTCTCCTGCTG 250681 29 100.0 37 ............................. CGTTCATGAAAAGTTCTTCAGGAAAGCTTATTCTAGC 250615 29 100.0 37 ............................. AGGTATTGAAATTACTGGCATTTGTCAATAAAAAGTT 250549 29 100.0 36 ............................. AACTATTAGCCTGCGGAATTTTAAAATATGCAAATA 250484 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAGGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCATAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATGTGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCAAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATTATATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGGCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATCGAATAAATTTATAGGTATGAACGTAATTTCACGCTTAAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATACAGAATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 265692-265140 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUMY01000001.1 Clostridioides difficile strain VRECD0128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 265691 29 100.0 36 ............................. ATTACAGTCATGCTCCATAGCTTCTATGACTTCTTT 265626 29 100.0 38 ............................. AAGGAGGTGATATAGTTGGCAGAACAAAAATATTATAC 265559 29 100.0 36 ............................. GTATATCTAACAGAAGAAGAAAAGAGAATACAAGAA 265494 29 100.0 36 ............................. TTATTTTTATTTAATATTTATCTTTAAAAATTATAA 265429 29 100.0 38 ............................. TTTTTTAATTCTGCGTCAGTCGGCGAAAGAGATGCAAC 265362 29 100.0 36 ............................. ACTTGTCTAGCCATTCAGTTTTTATTTTATCACCTG 265297 29 82.8 36 ................A.....GA...GT AGAATATTAGCAATATAAACGAGTATTTAGAAACTT 265232 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAATCAGCC 265168 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 92.7 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGAAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGTAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGAAACATAAGGGATTGAAGGTGTATGATAACTATTATCGATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATAATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAGATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATATAGGTATCGGAGGTAAACTTTTAGATTACGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //