Array 1 195946-197255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGZB010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S29 NODE_3_length_375841_cov_350.053212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 195946 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 196007 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 196068 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 196129 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 196190 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 196251 29 100.0 32 ............................. ATGCCGGAACGCTGATGGCGTTTGACATGAGC 196312 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 196373 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 196434 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 196495 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 196556 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 196617 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 196678 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 196740 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 196801 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 196862 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 196923 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 196984 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 197045 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 197106 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 197167 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 197228 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 213387-215290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGZB010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S29 NODE_3_length_375841_cov_350.053212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213387 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 213448 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 213509 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 213570 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 213631 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 213692 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 213753 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 213815 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 213876 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 213937 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 213998 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 214059 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 214120 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 214181 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 214242 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 214303 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 214364 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 214425 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 214486 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 214547 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 214609 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 214670 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [214712] 214712 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 214773 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 214834 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 214895 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 214956 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 215017 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 215078 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 215139 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 215200 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 215261 29 96.6 0 A............................ | A [215287] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //