Array 1 97504-98551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAH01000001.1 Pasteurella multocida subsp. multocida strain TX1 contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97504 28 100.0 32 ............................ TGAATTAAGAGAGAGAAAGTATTGGATGAACT 97564 28 100.0 32 ............................ AGTTAAACAAAAAAAAAGACAATAGCAGACGT 97624 28 100.0 32 ............................ ATCAGGTCATCTTCACGAGCCACCTGTTAAGC 97684 28 100.0 32 ............................ AACGGTCATTCCACCGCGTGCGTGGACTGGTA 97744 28 100.0 32 ............................ TCTTTGTTGTTGTTGTCGATAACTGTGTTGTT 97804 28 100.0 32 ............................ TAATAGGAAAATAAAAACATGAAACAACAATT 97864 28 100.0 32 ............................ AGCTGGAGACCGCACCTTTTACACAACACCTG 97924 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 97984 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 98044 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 98104 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 98164 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 98224 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 98284 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 98344 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 98404 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 98464 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [98472] 98525 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTAACTGCCGTATAGGCAGCTTAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16055-17583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAH01000002.1 Pasteurella multocida subsp. multocida strain TX1 contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16055 28 100.0 32 ............................ AATGCGCTTCTTAAGGCCATCATCAATAAAGC 16115 28 100.0 32 ............................ CAGATGCTCAGAGCTACTTTTAAACGAAATAT 16175 28 100.0 32 ............................ AATTAAACTATTGAAACTTTGAGTTTTCAAAT 16235 28 100.0 32 ............................ TATTAGGGGTTTAACGTTATCGAATGATTAAT 16295 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 16355 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 16415 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 16475 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 16535 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 16595 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 16655 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 16715 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 16775 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 16835 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 16895 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 16955 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 17015 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 17075 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 17135 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 17195 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 17255 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 17315 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 17375 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 17436 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 17496 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 17556 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 205177-205806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAH01000009.1 Pasteurella multocida subsp. multocida strain TX1 contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 205177 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 205243 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 205309 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 205375 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 205441 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 205507 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 205573 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 205639 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 205705 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 205771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //