Array 1 16547-20238 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAX01000015.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2739 NODE_15_length_123627_cov_4.62823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16547 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16608 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16669 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16730 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16791 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16852 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16913 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 16974 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17035 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17096 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17157 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17218 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17280 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17341 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17402 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17463 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17524 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17585 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 17646 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 17707 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 17768 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 17829 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 17890 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 17951 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 18013 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 18074 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 18135 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 18196 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 18257 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 18318 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 18379 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 18440 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 18501 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 18563 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 18624 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 18685 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 18746 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 18807 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 18868 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 18929 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 18990 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 19051 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 19112 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 19173 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 19234 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 19295 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 19356 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 19418 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 19479 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 19540 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 19601 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 19662 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 19723 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 19784 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 19845 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 19906 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 19967 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 20028 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 20089 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 20150 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20211 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 61 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 286589-288202 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAX01000005.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2739 NODE_5_length_288374_cov_4.72896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 286589 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 286650 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 286711 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 286772 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 286833 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 286894 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 286955 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 287016 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 287077 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 287138 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 287199 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 287260 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 287321 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 287382 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 287443 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 287504 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 287565 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 287626 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 287687 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 287748 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 287809 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 287870 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 287931 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 287992 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 288053 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 288114 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 288175 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //