Array 1 270-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNS010000379.1 Myxococcus xanthus strain AM003 NODE_379_length_286_cov_24.4025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 269 37 100.0 35 ..................................... GCGGCGGACAGCGACTCCGCCACGGACTGCACGCC 197 37 100.0 33 ..................................... ATCCGCGTCGCGCGGATCTCGAATCCATGCACC 127 37 100.0 33 ..................................... CGAACGGGCAAGGCGCCGAAGAAGAAGCGGAGT 57 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : CGAAGAAGAAGCGGAG # Right flank : CGCGGCGGACAGCGACTCCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18711-12835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNS010000007.1 Myxococcus xanthus strain AM003 NODE_7_length_103703_cov_39.5153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 18710 37 100.0 33 ..................................... GCCAAAGAATCATTTTTGACGAGGACACGGAGA 18640 37 100.0 33 ..................................... CATACGCAGAATAAAAGAAAGTACAGCATTTAC 18570 37 100.0 34 ..................................... CACCCTGTCCCGTTGGCTTTTACGGATGCTACCA 18499 37 100.0 34 ..................................... ATTTTCCGCAGGTGGGACAAGCTCTGCCTAAAAG 18428 37 100.0 33 ..................................... GCCACGCCCAGTGCCTCGGACAGCGTGGCCTTG 18358 37 100.0 37 ..................................... CATCAACGAGTTCAAGTGGATGGTGGAGCAGCTCCAC 18284 37 100.0 35 ..................................... CTCGACTTCGAGACGACGGGCCTGGACCCGGCCAC 18212 37 100.0 33 ..................................... CGGTTGCTTCGCGAGATGGAGGCGCTGTGCCAT 18142 37 100.0 33 ..................................... GGCAACAACCTGTCCATCGGGATAAGGGCTGCC 18072 37 100.0 35 ..................................... GAGGCTGCCGGTGACCACGAGATATTTGTGGGGAT 18000 37 100.0 33 ..................................... CTGAGCACGAGCGCAGCATGAGCATCCCAAGCC 17930 37 100.0 34 ..................................... CTTTCCGCAATGCAAGCCAAAGCTGAATATGACG 17859 37 100.0 35 ..................................... CAGGTGGGCGACGTGGAGCGCTTCACGGCGGACTG 17787 37 100.0 36 ..................................... AACCTCATCGCGTCCGAACTCGGCCTGCGCAGCCGG 17714 37 100.0 33 ..................................... CTTTCGTGCGACCCCGCGTTGGGGGCCAGGGGT 17644 37 100.0 35 ..................................... TCCAACCGGCGCAGTCGCTTGGCAACGGCGCCCAA 17572 37 100.0 32 ..................................... CTCCCGCTCCGCGTAGTCCAGGAGCTGCCGGG 17503 37 100.0 36 ..................................... CACCGGCTCTGGTGGACTCGACTGGCTACTCCTCAC 17430 37 97.3 34 ...T................................. GTCAGCACCCAGCAGTCCAAGGAGCAGACCCGAT 17359 37 100.0 32 ..................................... CACTCGCGCTGTGACGTGCCGCAGGTGGCGGG 17290 37 100.0 35 ..................................... CGTCTCTGCCTGCGTCATGGCTACCCCCTGTGGCT 17218 37 100.0 33 ..................................... CAGTCCAAGGAGAGCATCCGGCCCAGAGAGCCC 17148 37 100.0 32 ..................................... CGGGGCGCAGCGGAGCAGGAATCGCAGGCCTC 17079 37 100.0 34 ..................................... GAATCGTCACCGTCTCGTAGTTCTTGGCCAACCT 17008 37 100.0 36 ..................................... GAGAGCTGGATTGCGCTGCGCAGCAGCAGGAGGACC 16935 37 100.0 34 ..................................... AAGCTGCGTGGCAACGTCATGCCTGTGAGCTCCA 16864 37 100.0 32 ..................................... ATCGAATCGCAGTTGATGAAGGTCGAGAAGAA 16795 37 100.0 37 ..................................... CAAGGGCGTTGCCCGACTCCTGACGCGCGCAGAACAG 16721 37 100.0 33 ..................................... TGCGTCGACGGCATCCTGCACGACGTGTCCGAG 16651 37 100.0 33 ..................................... GAGTCACCCGTTTCCGGGGTGAACGCAACCGCC 16581 37 100.0 35 ..................................... ACCCAGCAGGCACGACTCGTTCGGGCCGAGGCAGC 16509 37 100.0 33 ..................................... CGCGAGCAGGCGGCGCGTGAGTGGCTCATCCGC 16439 37 100.0 36 ..................................... AAGAAGGCGGAGAGGAAGAACGCGAAGCTGCGGCTC 16366 37 100.0 34 ..................................... CTGGGCAAGGACATGGTGCAGGCCACGGCTACCC 16295 37 100.0 35 ..................................... TGGTTGGACACCCTCTCCATGTCCCGCGCCATCCA 16223 37 100.0 33 ..................................... AGCATCCCCGCCGCTGAGCACTCGACCATCACG 16153 37 100.0 36 ..................................... TCAAGCACCTCCGGAATGTCGCCAAGGTCAACGGTC 16080 37 100.0 36 ..................................... GGCGGTAAGGCCATCACTGGCCTCGACGCCGCGGTG 16007 37 100.0 34 ..................................... GAACGTGATTACGTACTCGTCCGCCCTCGACCAG 15936 37 100.0 33 ..................................... TACTTGGCCGCCCAGTGTTCTCTCAGGTTGGCC 15866 37 100.0 36 ..................................... GACAATGACGCCGCCGCTGCGGTGCGCAGCAACCGG 15793 37 100.0 33 ..................................... CAGGTGTTTCTGGGGCCACGCCCCGGCGAGGAG 15723 37 100.0 33 ..................................... CGCCACGGCTCACCCCTCGGTTTGCAGGCCCGA 15653 37 100.0 32 ..................................... ACGCCACGCGCGGCCGGCTGGACTGGCGCGCC 15584 37 100.0 36 ..................................... CACCCGGAAGGTGTCGCCGGAATAGACCGGCACCCG 15511 37 100.0 36 ..................................... GCACAGTCGCCTCTGGATGTCGAGGGACTCCGCCGC 15438 37 100.0 34 ..................................... CAGTAGGCGCGCTGCCGAGCGTTGTCGCAGTCGT 15367 37 100.0 36 ..................................... CTCGATACGCTTGGACGAATTGGGCGGGCTGTTGCT 15294 37 100.0 37 ..................................... GTGAAGGGCTCCGGTCAGCCGCGTCTGCTCCTTGAGC 15220 37 100.0 33 ..................................... ATGAAGGAGTGGTACGCCTGCCGGCTGGAGCGT 15150 37 100.0 35 ..................................... AGCAGCGGCGACGCCAACGAAATGACCCGGGCGCC 15078 37 100.0 33 ..................................... CGGAGCAGGACCTCTATGCGTTTCCGCATTCCA 15008 37 100.0 36 ..................................... GGCAGTTATCTTGTCCATGTTGCCCCCGGCACTAGT 14935 37 100.0 36 ..................................... GCTCACGCCCGGCGCCGGACTTGAGCACCCCCAGTC 14862 37 100.0 36 ..................................... CAATCCGGTTCCGCGCGCTCCGTCCACGTCGCCGTC 14789 37 100.0 36 ..................................... GTCGGAACGCACCGTCTCGTTGATGGCTTTGCGGAT 14716 37 100.0 32 ..................................... ACCCGTGAGTGCGACAAGGCAGCGGAGGCCAA 14647 37 100.0 37 ..................................... CCAGACGGCGGCACCGTAGTGCTCTACGAGGTACGCG 14573 37 100.0 33 ..................................... GCCGCTAACCTCTCCCTGCCCCACATATCCGGA 14503 37 100.0 33 ..................................... TTGTAGATGAGATACGCCGCCGCGGCGAACGCA 14433 37 100.0 34 ..................................... GGCTTCACGGACGCGCAGCTCTATGGCCCCAGCG 14362 37 100.0 35 ..................................... TCGCTGGAGGACCCGGAGATTTGGCTGCCGAAGCG 14290 37 100.0 34 ..................................... TGTATGCGGCCGGCTCGGTGGTTGCTGCCGGCGT 14219 37 100.0 33 ..................................... TGGGAAAACGTCGGCGGAGCAACTAGCGCTCTT 14149 37 100.0 34 ..................................... ATCCTCGCGCTGCAGTTGCGGAAGCTCGACGGCA 14078 37 100.0 34 ..................................... CCTCCCTCGCGCAGCCCTGGAAACCGCCTGCGTC 14007 37 100.0 34 ..................................... CGGGACGGCGTGGGGTGACTTCCAGGCTCTGACG 13936 37 100.0 34 ..................................... GAGTTGAAGGAGCCGAAGCGATGACGACGAAGAA 13865 37 100.0 33 ..................................... CGAACGGGCAAGGCGCCGAAGAAGAAGCGGAGT 13795 37 100.0 35 ..................................... GCGGCGGACAGCGACTCCGCCACGGACTGCACGCC 13723 37 100.0 32 ..................................... ACGATGGTTGGAGTGGATGCGCCAGGGATGAC 13654 37 100.0 34 ..................................... ATGGGAGTGCTCCTGGGGTGAGGCGAGAGCCGGG 13583 37 100.0 34 ..................................... CGGCTTCCGGTTGGGCCCACCTTCCGCGAGCGAC 13512 37 100.0 32 ..................................... GCTGGTCCTGGAAGGTCGGGCACCCCGACTAC 13443 37 100.0 33 ..................................... ATCGTCGGGTGTGGCGGACGCGCAGGCCAGACA 13373 37 100.0 35 ..................................... GCGCGATGGCCGAGGCAACGGCACTGCGCGCCTTG 13301 37 97.3 35 .........T........................... TCCGGGCTGGTGCTCGGGGCCGGGTGGCTCGCGCG 13229 37 97.3 36 ............A........................ GACATCTACGTCGACGACGTGGAAGGCGCTCAATGA 13156 37 94.6 35 ........G..........A................. GTCGGCAAGCGCGACGTGGGCCAGGACGAGCTGCC 13084 37 97.3 33 ........G............................ GCGCTGGAGCGGCTCCGCCACACCTTCGTGACG 13014 37 94.6 33 ........G..........C................. CCGGAGCAAGACGGGGGGCAGGTTGCCGCGCAC 12944 37 97.3 36 ...................C................. CCGCAGTTGAAGCGCTACAGCCAGTTCGCCCCCGAC 12871 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 83 37 99.7 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATCTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCATCCTACGCGCCCGCCTGCTTGATGCGTTCGACTCGGAATGCGACAGCCTGCGCTTCTATTTCCTGTCGGAAGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGGCCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGGCTCCGCGAACCGGCCCCGGTGTGCGCTCCGTCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAATGCGGCCGGATTCCGTAGTCAGAACGCTATGTTAGAGAGGCAGA # Right flank : GGTTCAGCTCACCGGTACTCTCCGTTGCTTCCACCGCGCTTGAGCGAAGGACTTTCGCCGCTGGAACATTCGGCACGGCGGCAGCAGCGGTTCTCCGCGGAGTCGCTCGTGCTCAGGCTCCAAGAGTCGCCGGGCATTCCCAATACACGGCACTTCTGGCTCGAGGTCTTCGGGGCTGGTCGTTCCAATCACGACGGCTCGTTCCTATCCGACGCGAACGTGGCCGCCGCCCATCGGCTCACGACGTTGCTCATCGCCGCGAGCTGGCTGGACGAATACAAGGAAGCTCGCAGCGCCCCTCCTCCCGTCGTACATGACCGGCAGGTGACAACGTCTGACTCCACCGTGGACGGTCGGCGCACGCGGCTGACGTTGGGCACCGACACGCCGCCCGACCTCCTCCGCTTCATGCAGCAGGTGGCTGCCGCTTACGGCATCGAACCTTGAGCGCGAGGACCCCGGGCGCCCCAGGGCTGGAGGAACACCGCCGTCTCCTCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //