Array 1 922147-923212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067369.1 Salmonella bongori strain Se40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 922147 29 100.0 32 ............................. CGGCAACCGACCCATCTGGAGGTACTGAAAAT 922208 29 100.0 32 ............................. GGCGGATACCGCTAATAAAATGCTAAAACAGC 922269 29 100.0 32 ............................. GCCATTAACCGTGCGTTGCGTCAGGTTGATCC 922330 29 100.0 32 ............................. TCTAATCAGTATAATGAAGAGACTTTAATTAA 922391 29 100.0 32 ............................. ACAATTCAGGACGTGCTGATTTCTGGGCTGGT 922452 29 100.0 32 ............................. TTATTCCTGAAAATCCTAATCTTCTATTTGTA 922513 29 100.0 32 ............................. AGTCATAAAATTCGGCGCATACGATAACTTTT 922574 29 100.0 32 ............................. AGCGAGTTCATTATAAATATCATGGTTGCCGC 922635 29 100.0 32 ............................. TACCCACGCGCAGCACGCCAATTTACGTAGTT 922696 29 100.0 32 ............................. GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT 922757 29 100.0 32 ............................. CCAATAATTAAACGTTGCATTTGTTGCTTCGG 922818 29 100.0 32 ............................. TTTTTTTTGTTTTATCAGGGCTACGCTATAAA 922879 29 100.0 32 ............................. GAATATCACATGAAATGTCAGGAACGCCTTTT 922940 29 100.0 32 ............................. ATGTACGCCAAATTTTCGCAAGTCATCGATCA 923001 29 100.0 32 ............................. GAAACAGTTACGCATCCGCTGTTTCCTGCTGG 923062 29 100.0 32 ............................. CTTCCGGATCATCCTTTGGTAACGGCTCTGAC 923123 29 100.0 32 ............................. GCAGATGAAAAATACTGCGGTTGGGTGCCCTC 923184 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCTATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACTTCGATATTATTCGATACCGGACCTGACGACAGTTTTCTACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 939194-940443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067369.1 Salmonella bongori strain Se40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 939194 29 100.0 32 ............................. AGACATCAGACCACCGCGAGCCAGGAACACGG 939255 29 96.6 32 ............................C GGGTATACGTTACACCGGGCAAATGTGGTACA 939316 29 100.0 32 ............................. GGGGGATGGAGGTGCTAGACCCACAGTTTTAG 939377 29 100.0 32 ............................. TTGGGCGACTCCAACGTTATAAAAATCAAAAA 939438 29 100.0 32 ............................. AATAATAGATTTATTAAGTGCGGGAGAAATTA 939499 29 100.0 32 ............................. TAATTCCTGTTTCCGTCATTAGCTGGCATAGA 939560 29 100.0 32 ............................. CATATAGTCATCTTACGCTAACAACTTGTTAA 939621 29 100.0 32 ............................. GATATATTCAGCGATATACTAACGGAATTAAT 939682 29 100.0 32 ............................. CGTTTCTCAATGGTGGGATGGCGCAAATGAAC 939743 29 100.0 32 ............................. CGGCAAACAAAATAGCGATTCACGGTAATACG 939804 29 100.0 32 ............................. GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA 939865 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 939926 29 100.0 32 ............................. TTACGCTGTGTAAAATACGGGGTGCATTCTAG 939987 29 96.6 32 ............G................ TACAGGTTGCCATCGGCCCCCATTCCAGCCAA 940048 29 100.0 32 ............................. GAATCCAGTTGCCGTTTAAATCAATTCGCGCC 940109 29 100.0 32 ............................. CACTACCCGTCTGAGGCCTGGACGATTATCCA 940170 29 100.0 32 ............................. AATTCAATACGGAGGGGTGTCAATGGATATCA 940231 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 940292 29 96.6 32 ................A............ GTCAGAATGACGAATTTCCCTGAATTATCAGA 940353 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 940414 29 86.2 0 .....................C.TT..T. | T [940439] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATACTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //